(19 nodes) Positive regulation of lipid metabolic process network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_019653	Beclin 1-associated autophagy-related key regulator. (462 aa)
	APZ42_026622	85/88 kDa calcium-independent phospholipase A2. (799 aa)
	APZ42_017016	Malonyl-CoA decarboxylase, mitochondrial. (581 aa)
	APZ42_026528	Longevity assurance protein. (393 aa)
	APZ42_013628	Fidgetin protein 1; Belongs to the AAA ATPase family. (618 aa)
	APZ42_013997	Nitrogen permease regulator 2 protein. (335 aa)
	APZ42_011171	Spastin; Belongs to the AAA ATPase family. (674 aa)
	APZ42_029246	Stomatin protein 2, mitochondrial. (358 aa)
	APZ42_030445	Longevity assurance factor 1 lag1. (295 aa)
	APZ42_013591	Peroxisomal biogenesis factor. (303 aa)
	APZ42_030439	Longevity assurance factor 1 lag1. (371 aa)
	APZ42_030373	Frataxin, mitochondrial. (188 aa)
	APZ42_034453	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1. (362 aa)
	APZ42_013209	Serine palmitoyltransferase subunit I. (468 aa)
	APZ42_028571	Activating molecule in BECN1-regulated autophagy 1-like protein. (1394 aa)
	APZ42_028699	Phosphatidate cytidylyltransferase. (344 aa)
	APZ42_021850	Nitrogen permease regulator 3-like protein. (579 aa)
	APZ42_020576	Putative Adrenodoxin. (136 aa)
	APZ42_020470	Ferredoxin 2. (183 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011171	APZ42_013591	A0A162T2M4	A0A0P4Y959	Spastin; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor.	0.603
APZ42_013591	APZ42_011171	A0A0P4Y959	A0A162T2M4	Peroxisomal biogenesis factor.	Spastin; Belongs to the AAA ATPase family.	0.603
APZ42_013591	APZ42_013628	A0A0P4Y959	A0A0P5ZTB2	Peroxisomal biogenesis factor.	Fidgetin protein 1; Belongs to the AAA ATPase family.	0.603
APZ42_013628	APZ42_013591	A0A0P5ZTB2	A0A0P4Y959	Fidgetin protein 1; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor.	0.603
APZ42_013997	APZ42_021850	A0A162QCX1	A0A164WB32	Nitrogen permease regulator 2 protein.	Nitrogen permease regulator 3-like protein.	0.998
APZ42_019653	APZ42_028571	A0A164YCB1	A0A164Q5X1	Beclin 1-associated autophagy-related key regulator.	Activating molecule in BECN1-regulated autophagy 1-like protein.	0.888
APZ42_020470	APZ42_020576	A0A164XI17	A0A164X6Z6	Ferredoxin 2.	Putative Adrenodoxin.	0.529
APZ42_020470	APZ42_030373	A0A164XI17	A0A0P5HGI1	Ferredoxin 2.	Frataxin, mitochondrial.	0.814
APZ42_020576	APZ42_020470	A0A164X6Z6	A0A164XI17	Putative Adrenodoxin.	Ferredoxin 2.	0.529
APZ42_020576	APZ42_030373	A0A164X6Z6	A0A0P5HGI1	Putative Adrenodoxin.	Frataxin, mitochondrial.	0.814
APZ42_021850	APZ42_013997	A0A164WB32	A0A162QCX1	Nitrogen permease regulator 3-like protein.	Nitrogen permease regulator 2 protein.	0.998
APZ42_026622	APZ42_034453	A0A0P5V4W6	A0A0P5M6A9	85/88 kDa calcium-independent phospholipase A2.	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.	0.569
APZ42_028571	APZ42_019653	A0A164Q5X1	A0A164YCB1	Activating molecule in BECN1-regulated autophagy 1-like protein.	Beclin 1-associated autophagy-related key regulator.	0.888
APZ42_028571	APZ42_034453	A0A164Q5X1	A0A0P5M6A9	Activating molecule in BECN1-regulated autophagy 1-like protein.	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.	0.463
APZ42_028699	APZ42_034453	A0A164QA91	A0A0P5M6A9	Phosphatidate cytidylyltransferase.	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.	0.633
APZ42_030373	APZ42_020470	A0A0P5HGI1	A0A164XI17	Frataxin, mitochondrial.	Ferredoxin 2.	0.814
APZ42_030373	APZ42_020576	A0A0P5HGI1	A0A164X6Z6	Frataxin, mitochondrial.	Putative Adrenodoxin.	0.814
APZ42_034453	APZ42_026622	A0A0P5M6A9	A0A0P5V4W6	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.	85/88 kDa calcium-independent phospholipase A2.	0.569
APZ42_034453	APZ42_028571	A0A0P5M6A9	A0A164Q5X1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.	Activating molecule in BECN1-regulated autophagy 1-like protein.	0.463
APZ42_034453	APZ42_028699	A0A0P5M6A9	A0A164QA91	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.	Phosphatidate cytidylyltransferase.	0.633