(45 nodes) Pigment biosynthetic process network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:
	APZ42_002193	Cytochrome C oxidase assembly protein COX15. (296 aa)
	APZ42_024067	Beta,beta-carotene 15,15'-dioxygenase. (600 aa)
	APZ42_026440	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (276 aa)
	APZ42_027414	ATPase inhibitor, mitochondrial. (101 aa)
	APZ42_028350	Mycosubtilin synthase subunit C. (884 aa)
	APZ42_028354	Mycosubtilin synthase subunit C. (923 aa)
	APZ42_028358	Mycosubtilin synthase subunit C. (899 aa)
	APZ42_028984	Beta,beta-carotene 15,15'-dioxygenase. (534 aa)
	APZ42_029276	Putative 9.2 kDa midgut protein. (75 aa)
	APZ42_032889	Putative Tryptophan. (299 aa)
	APZ42_032798	6-pyruvoyl tetrahydrobiopterin synthase. (80 aa)
	APZ42_034308	ABC protein, subfamily ABCG. (666 aa)
	APZ42_000407	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (268 aa)
	APZ42_001089	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (118 aa)
	APZ42_028232	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (348 aa)
	APZ42_034486	Monocarboxylate transporter 10. (561 aa)
	APZ42_026039	Oxygen-dependent coproporphyrinogen-III oxidase. (390 aa)
	APZ42_011854	Alpha-mannosidase. (1155 aa)
	APZ42_015195	Phospholipase DDHD2. (714 aa)
	APZ42_021444	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (866 aa)
	APZ42_026102	Alpha-mannosidase. (1335 aa)
	APZ42_004390	Uncharacterized protein. (123 aa)
	APZ42_005862	Uncharacterized protein. (87 aa)
	APZ42_005944	Nitrite reductase large subunit-like protein. (150 aa)
	APZ42_009608	Mycosubtilin synthase subunit C. (103 aa)
	APZ42_010987	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (185 aa)
	APZ42_011607	Porphobilinogen deaminase. (356 aa)
	APZ42_011381	Ras-related protein Rab-32. (617 aa)
	APZ42_012034	Putative GTP cyclohydrolase I protein punch. (232 aa)
	APZ42_014483	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (477 aa)
	APZ42_015079	Uroporphyrinogen-III synthase. (189 aa)
	APZ42_032905	Tryptophan 5-hydroxylase 2. (445 aa)
	APZ42_015986	Uncharacterized protein. (623 aa)
	APZ42_015724	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1060 aa)
	APZ42_015655	Clot protein. (126 aa)
	APZ42_021596	Vacuolar protein sorting-associated protein 18. (921 aa)
	APZ42_021010	Membrane-associated progesterone receptor component 2; Belongs to the cytochrome b5 family. (190 aa)
	APZ42_020289	D-dopachrome decarboxylase. (116 aa)
	APZ42_033870	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (547 aa)
	APZ42_029676	Tryptophan 2,3-dioxygenase A. (374 aa)
	APZ42_033024	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (332 aa)
	APZ42_031704	AP-3 complex subunit sigma-2. (189 aa)
	APZ42_011471	Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family. (391 aa)
	APZ42_024908	AP-3 complex subunit delta-1. (1215 aa)
	EOG090X0B72	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (249 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000407	APZ42_001089	A0A164JP86	A0A164J6I4	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.929
APZ42_000407	APZ42_015724	A0A164JP86	A0A162NQ33	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.993
APZ42_000407	APZ42_024908	A0A164JP86	A0A0P5HJ14	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit delta-1.	0.996
APZ42_000407	APZ42_031704	A0A164JP86	A0A0P4XAP2	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit sigma-2.	0.988
APZ42_001089	APZ42_000407	A0A164J6I4	A0A164JP86	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.929
APZ42_001089	APZ42_015724	A0A164J6I4	A0A162NQ33	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.990
APZ42_001089	APZ42_024908	A0A164J6I4	A0A0P5HJ14	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit delta-1.	0.995
APZ42_001089	APZ42_031704	A0A164J6I4	A0A0P4XAP2	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit sigma-2.	0.982
APZ42_002193	APZ42_010987	A0A164IFZ4	A0A162T7D6	Cytochrome C oxidase assembly protein COX15.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.428
APZ42_002193	APZ42_011471	A0A164IFZ4	A0A0P5DVP4	Cytochrome C oxidase assembly protein COX15.	Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.	0.997
APZ42_002193	APZ42_011607	A0A164IFZ4	A0A162SUT7	Cytochrome C oxidase assembly protein COX15.	Porphobilinogen deaminase.	0.572
APZ42_002193	APZ42_014483	A0A164IFZ4	A0A162PT95	Cytochrome C oxidase assembly protein COX15.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.621
APZ42_002193	APZ42_015079	A0A164IFZ4	A0A162P6G0	Cytochrome C oxidase assembly protein COX15.	Uroporphyrinogen-III synthase.	0.571
APZ42_002193	APZ42_015986	A0A164IFZ4	A0A162NJA2	Cytochrome C oxidase assembly protein COX15.	Uncharacterized protein.	0.442
APZ42_002193	APZ42_026039	A0A164IFZ4	A0A0P5Q6W8	Cytochrome C oxidase assembly protein COX15.	Oxygen-dependent coproporphyrinogen-III oxidase.	0.610
APZ42_002193	APZ42_027414	A0A164IFZ4	A0A164RL10	Cytochrome C oxidase assembly protein COX15.	ATPase inhibitor, mitochondrial.	0.468
APZ42_002193	APZ42_028232	A0A164IFZ4	A0A0P5KFH6	Cytochrome C oxidase assembly protein COX15.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.442
APZ42_002193	APZ42_033024	A0A164IFZ4	A0A0N8ECI7	Cytochrome C oxidase assembly protein COX15.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.428
APZ42_002193	APZ42_034308	A0A164IFZ4	A0A164K8J4	Cytochrome C oxidase assembly protein COX15.	ABC protein, subfamily ABCG.	0.468
APZ42_004390	APZ42_005862	A0A164H399	A0A164G7U8	Uncharacterized protein.	Uncharacterized protein.	0.619