(94 nodes) Dendrite morphogenesis network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_024874	HMG box domain-containing protein. (431 aa)
	APZ42_019487	Non-specific serine/threonine protein kinase. (524 aa)
	APZ42_028206	Lola-like protein. (399 aa)
	APZ42_024166	Putative Sentrin-specific protease. (303 aa)
	APZ42_022004	Putative Tyrosine-protein kinase Btk29A. (1513 aa)
	APZ42_023485	Putative Ankyrin repeat domain-containing protein 19. (1016 aa)
	APZ42_022910	Longitudinals lacking protein. (385 aa)
	APZ42_017329	Nuclear distribution protein nudE 1-B. (307 aa)
	APZ42_031771	Semaphorin-2A; Belongs to the semaphorin family. (711 aa)
	APZ42_023626	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (509 aa)
	APZ42_015260	Transcription factor collier. (448 aa)
	APZ42_012615	Rho-related GTP-binding protein RhoF. (223 aa)
	APZ42_033086	Sentrin-specific protease. (677 aa)
	APZ42_032183	Putative AP2-associated protein kinase. (692 aa)
	APZ42_017455	Target of rapamycin complex 2 subunit MAPKAP1. (430 aa)
	APZ42_016484	Cullin-3; Belongs to the cullin family. (771 aa)
	APZ42_033980	Replication factor C subunit 1. (1083 aa)
	APZ42_012709	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (540 aa)
	APZ42_023690	Heart-and neural crest derivatives-expressed protein. (289 aa)
	EOG090X0EYT	Putative Transforming protein Ski. (506 aa)
	APZ42_024542	Brahma associated protein 55kD; Belongs to the actin family. (429 aa)
	APZ42_012156	FAM206 family protein. (171 aa)
	APZ42_023094	Putative Division abnormally delayed protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (487 aa)
	APZ42_023536	Set1/Ash2 histone methyltransferase complex subunit ASH2. (607 aa)
	APZ42_020222	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (467 aa)
	APZ42_021735	Solute carrier family 35 member B1. (317 aa)
	APZ42_020506	Protocadherin wing polarity protein stan. (1301 aa)
	APZ42_020865	Tyrosine phosphatase 69D protein. (1470 aa)
	APZ42_029428	Putative Sentrin-specific Protease. (944 aa)
	APZ42_028369	HECT domain-containing protein. (455 aa)
	APZ42_032191	BTB domain-containing protein. (403 aa)
	APZ42_026239	Caspase Dronc; Belongs to the peptidase C14A family. (466 aa)
	APZ42_031172	Girdin. (1617 aa)
	APZ42_031074	Putative Shn zinc finger protein. (1642 aa)
	APZ42_030530	GCM domain-containing protein. (498 aa)
	APZ42_014948	Putative Pumilio. (1214 aa)
	APZ42_015074	Microtubule-actin cross-linking factor 1. (5007 aa)
	APZ42_015345	Charged multivesicular body protein 4B. (140 aa)
	APZ42_014678	DNA-binding protein SATB. (924 aa)
	APZ42_014476	Putative LIM domain-containing protein 2. (2301 aa)
	APZ42_014119	Zinc finger BED domain-containing protein 1. (819 aa)
	APZ42_014122	Uncharacterized protein. (810 aa)
	APZ42_014156	Uncharacterized protein. (2453 aa)
	APZ42_013807	Homeobox protein Nkx-2.4. (492 aa)
	APZ42_013637	Homeobox domain-containing protein. (650 aa)
	APZ42_013130	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family. (1116 aa)
	APZ42_013134	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit Delta; Belongs to the PI3/PI4-kinase family. (658 aa)
	APZ42_012864	POU domain protein. (437 aa)
	APZ42_012757	Zinc finger MYM-type-like protein. (198 aa)
	APZ42_012382	No-mechanoreceptor potential A. (1157 aa)
	APZ42_011853	39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family. (1327 aa)
	APZ42_011470	Putative Transcription factor prospero. (962 aa)
	APZ42_011793	Uncharacterized protein. (2828 aa)
	APZ42_004669	Ras GTP-binding protein Rho1. (41 aa)
	APZ42_000691	Uncharacterized protein. (112 aa)
	APZ42_034436	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2457 aa)
	APZ42_034292	Tryptophan--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family. (353 aa)
	APZ42_034075	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family. (779 aa)
	APZ42_033218	Segmentation protein CAP'N'collar. (780 aa)
	APZ42_032293	Microsomal triglyceride transfer protein large subunit. (873 aa)
	APZ42_030961	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1. (401 aa)
	APZ42_030386	Transcription factor RFX3-like protein. (357 aa)
	APZ42_030383	Transcription factor RFX3. (452 aa)
	APZ42_030263	Zinc finger and BTB domain-containing protein 18. (416 aa)
	APZ42_030114	Ena/VASP-like protein. (436 aa)
	APZ42_030076	ATP-dependent Helicase brm. (1476 aa)
	APZ42_029519	Putative Insulin gene enhancer protein ISL-2. (500 aa)
	APZ42_029523	Putative Insulin gene enhancer protein ISL-1. (134 aa)
	APZ42_028159	SLIT protein. (1404 aa)
	APZ42_028367	HECT domain-containing protein. (329 aa)
	APZ42_027049	Iroquois-class homeodomain IRX-1-like protein. (783 aa)
	APZ42_027079	Homeobox protein caupolican. (724 aa)
	APZ42_026815	Class E basic helix-loop-helix 41-like protein. (753 aa)
	APZ42_025666	Transcription factor glial cells missing. (110 aa)
	APZ42_025393	Endoribonuclease Dcr-1. (1807 aa)
	APZ42_025211	Enhancer of polycomb-like protein. (699 aa)
	APZ42_024428	Netrin-1. (646 aa)
	APZ42_024107	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (532 aa)
	APZ42_024146	Glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (767 aa)
	APZ42_024197	Ras-related protein Rab-5C. (227 aa)
	APZ42_023440	Catenin Delta-2. (955 aa)
	APZ42_023488	Neuroglian. (1262 aa)
	APZ42_023419	ARID domain-containing protein. (101 aa)
	APZ42_023373	Retained, isoform b. (354 aa)
	APZ42_022275	Dynein heavy chain, cytoplasmic. (4656 aa)
	APZ42_021872	Zinc finger protein 207. (364 aa)
	APZ42_021684	Structural maintenance of chromosomes protein. (1248 aa)
	APZ42_021090	Putative Ubiquitin-protein ligase E3A. (1419 aa)
	APZ42_020929	Zinc finger and BTB domain-containing protein 44. (430 aa)
	APZ42_020519	Putative Protocadherin wing polarity protein stan. (102 aa)
	APZ42_020539	Protocadherin wing polarity protein stan; Belongs to the G-protein coupled receptor 2 family. (1930 aa)
	APZ42_019863	Putative Longitudinals lackingprotein. (558 aa)
	APZ42_018469	Uncharacterized protein. (616 aa)
	APZ42_016821	HMG box domain-containing protein. (544 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_004669	APZ42_013130	A0A164GWT3	A0A162R1L1	Ras GTP-binding protein Rho1.	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	0.617
APZ42_004669	APZ42_013134	A0A164GWT3	A0A162R1M2	Ras GTP-binding protein Rho1.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit Delta; Belongs to the PI3/PI4-kinase family.	0.617
APZ42_004669	APZ42_015074	A0A164GWT3	A0A162P6X1	Ras GTP-binding protein Rho1.	Microtubule-actin cross-linking factor 1.	0.703
APZ42_004669	APZ42_016484	A0A164GWT3	A0A0P5QRU8	Ras GTP-binding protein Rho1.	Cullin-3; Belongs to the cullin family.	0.687
APZ42_004669	APZ42_019487	A0A164GWT3	A0A0N8AQC0	Ras GTP-binding protein Rho1.	Non-specific serine/threonine protein kinase.	0.530
APZ42_004669	APZ42_020222	A0A164GWT3	A0A0P6F0T0	Ras GTP-binding protein Rho1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.650
APZ42_004669	APZ42_022004	A0A164GWT3	A0A0P4WMC5	Ras GTP-binding protein Rho1.	Putative Tyrosine-protein kinase Btk29A.	0.665
APZ42_004669	APZ42_023440	A0A164GWT3	A0A164UXR4	Ras GTP-binding protein Rho1.	Catenin Delta-2.	0.839
APZ42_004669	APZ42_023485	A0A164GWT3	A0A0P5E9N4	Ras GTP-binding protein Rho1.	Putative Ankyrin repeat domain-containing protein 19.	0.452
APZ42_004669	APZ42_023626	A0A164GWT3	A0A0P5G770	Ras GTP-binding protein Rho1.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.584
APZ42_004669	APZ42_024197	A0A164GWT3	A0A164UJQ4	Ras GTP-binding protein Rho1.	Ras-related protein Rab-5C.	0.460
APZ42_004669	APZ42_024542	A0A164GWT3	A0A0P5YDI5	Ras GTP-binding protein Rho1.	Brahma associated protein 55kD; Belongs to the actin family.	0.474
APZ42_004669	APZ42_028159	A0A164GWT3	A0A164QJB4	Ras GTP-binding protein Rho1.	SLIT protein.	0.514
APZ42_004669	APZ42_030076	A0A164GWT3	A0A164P2K5	Ras GTP-binding protein Rho1.	ATP-dependent Helicase brm.	0.550
APZ42_004669	APZ42_030114	A0A164GWT3	A0A164P1P3	Ras GTP-binding protein Rho1.	Ena/VASP-like protein.	0.652
APZ42_004669	APZ42_031172	A0A164GWT3	A0A162DC28	Ras GTP-binding protein Rho1.	Girdin.	0.561
APZ42_004669	APZ42_031771	A0A164GWT3	A0A0P5ESR9	Ras GTP-binding protein Rho1.	Semaphorin-2A; Belongs to the semaphorin family.	0.572
APZ42_004669	APZ42_034075	A0A164GWT3	A0A164KGP3	Ras GTP-binding protein Rho1.	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	0.568
APZ42_004669	APZ42_034436	A0A164GWT3	A0A164K7C0	Ras GTP-binding protein Rho1.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.834
APZ42_011793	APZ42_012709	A0A162T115	A0A0P5V584	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.664