(15 nodes) Lysine-acetylated histone binding network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_020666	MYND-type domain-containing protein. (169 aa)
	APZ42_017846	Bromodomain and WD repeat-containing-like protein. (84 aa)
	APZ42_020483	Bromo domain-containing protein. (1518 aa)
	APZ42_020649	Uncharacterized protein. (1023 aa)
	APZ42_022006	Wd repeat domain-containing-like protein. (1218 aa)
	APZ42_025821	Bromo domain-containing protein. (683 aa)
	APZ42_027631	Uncharacterized protein. (1702 aa)
	APZ42_012136	Proteasome activator complex subunit. (1077 aa)
	APZ42_012142	Proteasome activator complex subunit. (674 aa)
	APZ42_012371	Uncharacterized protein. (946 aa)
	APZ42_014478	Putative Bromodomain and WD repeat-containing protein. (2069 aa)
	APZ42_022562	Nucleosome-remodeling factor subunit NURF301. (2231 aa)
	APZ42_021853	ZZ-type zinc finger-containing protein. (413 aa)
	APZ42_018798	Bromodomain-containing protein 7. (756 aa)
	APZ42_013271	Putative Bromodomain testis-specific protein. (1476 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_012136	APZ42_012142	A0A162S4A9	A0A162S495	Proteasome activator complex subunit.	Proteasome activator complex subunit.	0.950
APZ42_012142	APZ42_012136	A0A162S495	A0A162S4A9	Proteasome activator complex subunit.	Proteasome activator complex subunit.	0.950
APZ42_013271	APZ42_018798	A0A0P4XCN3	A0A0P5PBB7	Putative Bromodomain testis-specific protein.	Bromodomain-containing protein 7.	0.491
APZ42_018798	APZ42_013271	A0A0P5PBB7	A0A0P4XCN3	Bromodomain-containing protein 7.	Putative Bromodomain testis-specific protein.	0.491
APZ42_018798	APZ42_020483	A0A0P5PBB7	A0A164XIT2	Bromodomain-containing protein 7.	Bromo domain-containing protein.	0.436
APZ42_020483	APZ42_018798	A0A164XIT2	A0A0P5PBB7	Bromo domain-containing protein.	Bromodomain-containing protein 7.	0.436
APZ42_020649	APZ42_020666	A0A164XAF2	A0A164XAG5	Uncharacterized protein.	MYND-type domain-containing protein.	0.547
APZ42_020666	APZ42_020649	A0A164XAG5	A0A164XAF2	MYND-type domain-containing protein.	Uncharacterized protein.	0.547