(22 nodes) Transcription preinitiation complex assembly network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_027296	Transcription initiation factor TFIID subunit 7. (376 aa)
	APZ42_016542	Transcription initiation factor TFIID subunit 1. (1826 aa)
	APZ42_016994	PIH1 domain-containing protein 1. (208 aa)
	APZ42_016807	SANT domain-containing protein. (711 aa)
	APZ42_021147	Putative Transcription initiation factor TFIID subunit 11. (261 aa)
	APZ42_024009	Putative Transcription initiation factor TFIID subunit 2. (1846 aa)
	APZ42_023872	Uncharacterized protein. (791 aa)
	APZ42_025175	Putative Transcription factor A, mitochondrial. (618 aa)
	APZ42_030245	Putative Transcription factor IIIB 90 kDa subunit. (303 aa)
	APZ42_032284	Transcription factor IIIB 90 kDa subunit. (81 aa)
	APZ42_034382	Transcription initiation factor IIB. (319 aa)
	APZ42_013561	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein. (534 aa)
	APZ42_015656	Putative Transcription initiation factor TFIID subunit 3. (928 aa)
	APZ42_031327	Transcription factor IIIB 90 kDa subunit. (230 aa)
	APZ42_032266	Transcription initiation factor IIA subunit 2. (159 aa)
	APZ42_032789	Transcription initiation factor iib general transcription factor tfiib. (308 aa)
	APZ42_014504	Transcription initiation factor TFIID subunit 9. (229 aa)
	APZ42_031489	Putative DNA-directed RNA polymerase I subunit RPA49. (408 aa)
	EOG090X0HZC	Transcription initiation factor TFIID subunit 12. (136 aa)
	EOG090X0LUS	Tata-binding protein-associated phosphoprotein dr1. (169 aa)
	APZ42_027379	Transcription initiation factor TFIID subunit 6. (601 aa)
	APZ42_021252	Uncharacterized protein. (397 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013561	APZ42_014504	A0A162QL97	A0A0P5UWN3	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor TFIID subunit 9.	0.989
APZ42_013561	APZ42_015656	A0A162QL97	A0A162NTQ4	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Putative Transcription initiation factor TFIID subunit 3.	0.980
APZ42_013561	APZ42_016542	A0A162QL97	A0A165AHB0	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor TFIID subunit 1.	0.988
APZ42_013561	APZ42_021147	A0A162QL97	A0A164X125	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Putative Transcription initiation factor TFIID subunit 11.	0.989
APZ42_013561	APZ42_024009	A0A162QL97	A0A164UE43	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Putative Transcription initiation factor TFIID subunit 2.	0.989
APZ42_013561	APZ42_025175	A0A162QL97	A0A164TDJ6	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Putative Transcription factor A, mitochondrial.	0.788
APZ42_013561	APZ42_027296	A0A162QL97	A0A0P5Y761	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor TFIID subunit 7.	0.989
APZ42_013561	APZ42_027379	A0A162QL97	A0A0P5CCY5	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor TFIID subunit 6.	0.840
APZ42_013561	APZ42_032266	A0A162QL97	A0A162D9R4	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor IIA subunit 2.	0.820
APZ42_013561	APZ42_032789	A0A162QL97	A0A0P5XYS4	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor iib general transcription factor tfiib.	0.838
APZ42_013561	APZ42_034382	A0A162QL97	A0A164K5J2	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor IIB.	0.838
APZ42_013561	EOG090X0HZC	A0A162QL97	A0A0P5JXH8	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	Transcription initiation factor TFIID subunit 12.	0.994
APZ42_014504	APZ42_013561	A0A0P5UWN3	A0A162QL97	Transcription initiation factor TFIID subunit 9.	TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.	0.989
APZ42_014504	APZ42_015656	A0A0P5UWN3	A0A162NTQ4	Transcription initiation factor TFIID subunit 9.	Putative Transcription initiation factor TFIID subunit 3.	0.987
APZ42_014504	APZ42_016542	A0A0P5UWN3	A0A165AHB0	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 1.	0.999
APZ42_014504	APZ42_021147	A0A0P5UWN3	A0A164X125	Transcription initiation factor TFIID subunit 9.	Putative Transcription initiation factor TFIID subunit 11.	0.999
APZ42_014504	APZ42_024009	A0A0P5UWN3	A0A164UE43	Transcription initiation factor TFIID subunit 9.	Putative Transcription initiation factor TFIID subunit 2.	0.999
APZ42_014504	APZ42_025175	A0A0P5UWN3	A0A164TDJ6	Transcription initiation factor TFIID subunit 9.	Putative Transcription factor A, mitochondrial.	0.558
APZ42_014504	APZ42_027296	A0A0P5UWN3	A0A0P5Y761	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 7.	0.999
APZ42_014504	APZ42_027379	A0A0P5UWN3	A0A0P5CCY5	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 6.	0.999