(30 nodes) Ubiquitin ligase-substrate adaptor activity network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_017107	F-box/WD repeat-containing protein 1A. (523 aa)
	APZ42_027632	Uncharacterized protein. (845 aa)
	APZ42_032885	F-box domain-containing protein. (183 aa)
	APZ42_011555	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin domain member 2-like protein. (384 aa)
	APZ42_001384	ANK_REP_REGION domain-containing protein. (137 aa)
	APZ42_001372	ANK_REP_REGION domain-containing protein. (141 aa)
	APZ42_032079	F-box domain-containing protein. (447 aa)
	APZ42_029781	F-box domain-containing protein. (442 aa)
	APZ42_028872	Fem-1 B protein. (59 aa)
	APZ42_029136	Germ cell-less 1-like protein. (486 aa)
	APZ42_029295	Ankyrin-3-like protein. (229 aa)
	APZ42_011771	WD_REPEATS_REGION domain-containing protein. (493 aa)
	APZ42_024863	Uncharacterized protein. (468 aa)
	APZ42_020448	Protein fem-1 B. (648 aa)
	APZ42_022520	NADPH-dependent diflavin oxidoreductase. (644 aa)
	APZ42_014698	Kelch domain-containing protein 2. (398 aa)
	EOG090X028J	Abnormal oocyte. (552 aa)
	APZ42_016508	Uncharacterized protein. (426 aa)
	APZ42_023635	Ran-binding 9-like protein. (307 aa)
	APZ42_028789	Putative F-box only protein 42. (530 aa)
	APZ42_029764	F-box/WD repeat-containing protein 1A. (510 aa)
	APZ42_017707	ANK_REP_REGION domain-containing protein. (530 aa)
	APZ42_028571	Activating molecule in BECN1-regulated autophagy 1-like protein. (1394 aa)
	APZ42_024264	ANK_REP_REGION domain-containing protein. (910 aa)
	APZ42_024266	Uncharacterized protein. (680 aa)
	APZ42_023528	SWIM-type domain-containing protein. (1875 aa)
	APZ42_022647	ANK_REP_REGION domain-containing protein. (650 aa)
	APZ42_020648	Protein fem-1 B. (746 aa)
	APZ42_019930	Uncharacterized protein. (474 aa)
	APZ42_025448	DDB1-and CUL4-associated factor 12. (462 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011771	APZ42_017107	A0A0P5UNX2	A0A162CKW2	WD_REPEATS_REGION domain-containing protein.	F-box/WD repeat-containing protein 1A.	0.633
APZ42_016508	APZ42_017107	A0A165AGE6	A0A162CKW2	Uncharacterized protein.	F-box/WD repeat-containing protein 1A.	0.757
APZ42_017107	APZ42_011771	A0A162CKW2	A0A0P5UNX2	F-box/WD repeat-containing protein 1A.	WD_REPEATS_REGION domain-containing protein.	0.633
APZ42_017107	APZ42_016508	A0A162CKW2	A0A165AGE6	F-box/WD repeat-containing protein 1A.	Uncharacterized protein.	0.757
APZ42_017107	APZ42_024863	A0A162CKW2	A0A0P5TLI2	F-box/WD repeat-containing protein 1A.	Uncharacterized protein.	0.757
APZ42_017107	APZ42_029764	A0A162CKW2	A0A0P4WPW7	F-box/WD repeat-containing protein 1A.	F-box/WD repeat-containing protein 1A.	0.779
APZ42_017107	APZ42_029781	A0A162CKW2	A0A164PBE7	F-box/WD repeat-containing protein 1A.	F-box domain-containing protein.	0.757
APZ42_017107	APZ42_032079	A0A162CKW2	A0A164MAD1	F-box/WD repeat-containing protein 1A.	F-box domain-containing protein.	0.757
APZ42_017107	APZ42_032885	A0A162CKW2	A0A162D9A2	F-box/WD repeat-containing protein 1A.	F-box domain-containing protein.	0.633
APZ42_024863	APZ42_017107	A0A0P5TLI2	A0A162CKW2	Uncharacterized protein.	F-box/WD repeat-containing protein 1A.	0.757
APZ42_029764	APZ42_017107	A0A0P4WPW7	A0A162CKW2	F-box/WD repeat-containing protein 1A.	F-box/WD repeat-containing protein 1A.	0.779
APZ42_029781	APZ42_017107	A0A164PBE7	A0A162CKW2	F-box domain-containing protein.	F-box/WD repeat-containing protein 1A.	0.757
APZ42_032079	APZ42_017107	A0A164MAD1	A0A162CKW2	F-box domain-containing protein.	F-box/WD repeat-containing protein 1A.	0.757
APZ42_032885	APZ42_017107	A0A162D9A2	A0A162CKW2	F-box domain-containing protein.	F-box/WD repeat-containing protein 1A.	0.633