(17 nodes) P-body network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	APZ42_025428	SAM_Exu domain-containing protein. (519 aa)
	APZ42_025991	PAT1 1 protein. (724 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (137 aa)
	APZ42_011344	Putative RING finger and CCCH-type Zinc finger domain-containing protein 2. (875 aa)
	APZ42_012837	Protein argonaute-1. (925 aa)
	APZ42_013906	PAB-dependent poly(A)-specific ribonuclease subunit PAN2. (1060 aa)
	APZ42_014179	Putative RNA-binding protein MEX3D. (492 aa)
	APZ42_019608	Eukaryotic translation initiation factor 4E transporter. (882 aa)
	APZ42_013175	Enhancer of mRNA-decapping protein 4. (1123 aa)
	APZ42_002060	Proline-rich nuclear receptor coactivator 2. (151 aa)
	EOG090X07B6	mRNA-decapping enzyme 1B. (405 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (674 aa)
	APZ42_027415	Protein argonaute-1; Belongs to the argonaute family. (945 aa)
	EOG090X09A7	Cell differentiation protein RCD1. (299 aa)
	APZ42_034476	Putative Dis3; Belongs to the RNR ribonuclease family. (1310 aa)
	APZ42_016910	RRM domain-containing protein. (1633 aa)
	APZ42_024658	mRNA-decapping enzyme 2. (365 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002060	EOG090X07B6	A0A0P5ZES7	A0A0P5NA77	Proline-rich nuclear receptor coactivator 2.	mRNA-decapping enzyme 1B.	0.671
APZ42_011344	APZ42_025991	A0A162SLI5	A0A164SJN7	Putative RING finger and CCCH-type Zinc finger domain-containing protein 2.	PAT1 1 protein.	0.595
APZ42_011344	EOG090X09A7	A0A162SLI5	A0A164L5M9	Putative RING finger and CCCH-type Zinc finger domain-containing protein 2.	Cell differentiation protein RCD1.	0.667
APZ42_012837	APZ42_013175	A0A162RFB0	A0A0P5ZJD0	Protein argonaute-1.	Enhancer of mRNA-decapping protein 4.	0.405
APZ42_012837	APZ42_016910	A0A162RFB0	A0A165A945	Protein argonaute-1.	RRM domain-containing protein.	0.976
APZ42_012837	APZ42_024658	A0A162RFB0	A0A164TV96	Protein argonaute-1.	mRNA-decapping enzyme 2.	0.406
APZ42_012837	EOG090X07B6	A0A162RFB0	A0A0P5NA77	Protein argonaute-1.	mRNA-decapping enzyme 1B.	0.425
APZ42_013175	APZ42_012837	A0A0P5ZJD0	A0A162RFB0	Enhancer of mRNA-decapping protein 4.	Protein argonaute-1.	0.405
APZ42_013175	APZ42_024658	A0A0P5ZJD0	A0A164TV96	Enhancer of mRNA-decapping protein 4.	mRNA-decapping enzyme 2.	0.999
APZ42_013175	APZ42_025991	A0A0P5ZJD0	A0A164SJN7	Enhancer of mRNA-decapping protein 4.	PAT1 1 protein.	0.984
APZ42_013175	APZ42_027415	A0A0P5ZJD0	A0A0P5DP86	Enhancer of mRNA-decapping protein 4.	Protein argonaute-1; Belongs to the argonaute family.	0.405
APZ42_013175	EOG090X07B6	A0A0P5ZJD0	A0A0P5NA77	Enhancer of mRNA-decapping protein 4.	mRNA-decapping enzyme 1B.	0.999
APZ42_013175	LSM1	A0A0P5ZJD0	A0A162T0F7	Enhancer of mRNA-decapping protein 4.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.866
APZ42_013906	APZ42_016910	A0A162QDU3	A0A165A945	PAB-dependent poly(A)-specific ribonuclease subunit PAN2.	RRM domain-containing protein.	0.819
APZ42_013906	APZ42_034476	A0A162QDU3	A0A164K841	PAB-dependent poly(A)-specific ribonuclease subunit PAN2.	Putative Dis3; Belongs to the RNR ribonuclease family.	0.510
APZ42_013906	EOG090X07B6	A0A162QDU3	A0A0P5NA77	PAB-dependent poly(A)-specific ribonuclease subunit PAN2.	mRNA-decapping enzyme 1B.	0.403
APZ42_013906	EOG090X09A7	A0A162QDU3	A0A164L5M9	PAB-dependent poly(A)-specific ribonuclease subunit PAN2.	Cell differentiation protein RCD1.	0.453
APZ42_013906	LSM1	A0A162QDU3	A0A162T0F7	PAB-dependent poly(A)-specific ribonuclease subunit PAN2.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.453
APZ42_013906	PAN3	A0A162QDU3	A0A0P5F5Z4	PAB-dependent poly(A)-specific ribonuclease subunit PAN2.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]	0.999
APZ42_014179	EOG090X07B6	A0A162Q0N7	A0A0P5NA77	Putative RNA-binding protein MEX3D.	mRNA-decapping enzyme 1B.	0.433