(18 nodes) COPII-coated ER to Golgi transport vesicle network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_019750	Transport Sec24B,-like protein. (400 aa)
	APZ42_013796	Uncharacterized protein. (1206 aa)
	APZ42_013695	SREBP cleavage activating protein. (1312 aa)
	APZ42_012422	Putative Niemann-Pick C1 protein. (437 aa)
	APZ42_033286	Protein transport protein Sec24C. (1058 aa)
	EOG090X0GIP	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (213 aa)
	APZ42_027035	Proteasome-associated protein ECM29. (1786 aa)
	APZ42_029114	Vesicle transport through interaction with t-SNAREsA. (218 aa)
	APZ42_030563	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)
	APZ42_017873	F-box/WD repeat-containing protein 1A. (775 aa)
	APZ42_011577	Lectin, mannose-binding, 1. (521 aa)
	APZ42_015195	Phospholipase DDHD2. (714 aa)
	APZ42_028742	General vesicular transport factor p115. (894 aa)
	APZ42_021533	Transport protein Sec24B protein. (210 aa)
	APZ42_031428	Programmed cell death protein 6. (184 aa)
	APZ42_021778	Patched domain-containing. (983 aa)
	APZ42_019396	Transport protein Sec31A. (1244 aa)
	APZ42_023261	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011577	APZ42_013796	A0A0P5TKR5	A0A162QFE9	Lectin, mannose-binding, 1.	Uncharacterized protein.	0.670
APZ42_011577	APZ42_015195	A0A0P5TKR5	A0A0P5YSY4	Lectin, mannose-binding, 1.	Phospholipase DDHD2.	0.669
APZ42_011577	APZ42_019396	A0A0P5TKR5	A0A0P5ZWL8	Lectin, mannose-binding, 1.	Transport protein Sec31A.	0.845
APZ42_011577	APZ42_019750	A0A0P5TKR5	A0A162CM36	Lectin, mannose-binding, 1.	Transport Sec24B,-like protein.	0.670
APZ42_011577	APZ42_021533	A0A0P5TKR5	A0A164WKY7	Lectin, mannose-binding, 1.	Transport protein Sec24B protein.	0.670
APZ42_011577	APZ42_023261	A0A0P5TKR5	A0A164V2T5	Lectin, mannose-binding, 1.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.822
APZ42_011577	APZ42_028742	A0A0P5TKR5	A0A0P5YTG8	Lectin, mannose-binding, 1.	General vesicular transport factor p115.	0.716
APZ42_011577	APZ42_030563	A0A0P5TKR5	A0A0P5E3T1	Lectin, mannose-binding, 1.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.856
APZ42_011577	APZ42_033286	A0A0P5TKR5	A0A164L8C2	Lectin, mannose-binding, 1.	Protein transport protein Sec24C.	0.791
APZ42_011577	EOG090X0GIP	A0A0P5TKR5	A0A0N8D828	Lectin, mannose-binding, 1.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.822
APZ42_013796	APZ42_011577	A0A162QFE9	A0A0P5TKR5	Uncharacterized protein.	Lectin, mannose-binding, 1.	0.670
APZ42_013796	APZ42_015195	A0A162QFE9	A0A0P5YSY4	Uncharacterized protein.	Phospholipase DDHD2.	0.694
APZ42_013796	APZ42_019396	A0A162QFE9	A0A0P5ZWL8	Uncharacterized protein.	Transport protein Sec31A.	0.979
APZ42_013796	APZ42_019750	A0A162QFE9	A0A162CM36	Uncharacterized protein.	Transport Sec24B,-like protein.	0.413
APZ42_013796	APZ42_021533	A0A162QFE9	A0A164WKY7	Uncharacterized protein.	Transport protein Sec24B protein.	0.932
APZ42_013796	APZ42_023261	A0A162QFE9	A0A164V2T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.932
APZ42_013796	APZ42_028742	A0A162QFE9	A0A0P5YTG8	Uncharacterized protein.	General vesicular transport factor p115.	0.707
APZ42_013796	APZ42_030563	A0A162QFE9	A0A0P5E3T1	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.991
APZ42_013796	APZ42_033286	A0A162QFE9	A0A164L8C2	Uncharacterized protein.	Protein transport protein Sec24C.	0.980
APZ42_013796	EOG090X0GIP	A0A162QFE9	A0A0N8D828	Uncharacterized protein.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.748