(94 nodes) Dendrite network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_020810	Neurofibromin. (358 aa)
	APZ42_020790	Neurofibromin. (2212 aa)
	APZ42_021136	Putative WD repeat-containing protein 18. (1289 aa)
	APZ42_021900	Putative Potassium voltage-gated channel protein Shal. (163 aa)
	APZ42_023127	Mitogen-activated protein kinase. (401 aa)
	APZ42_023095	Uncharacterized protein. (2052 aa)
	APZ42_023243	Lin-10 protein. (306 aa)
	APZ42_023488	Neuroglian. (1262 aa)
	APZ42_018949	Integrin beta; Belongs to the integrin beta chain family. (786 aa)
	APZ42_017960	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1136 aa)
	APZ42_017726	Neurexin-2-alpha. (1470 aa)
	APZ42_017689	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (200 aa)
	APZ42_016927	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (226 aa)
	APZ42_016912	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (193 aa)
	APZ42_016955	Ephrin-B1; Belongs to the ephrin family. (290 aa)
	APZ42_013856	Uncharacterized protein. (435 aa)
	APZ42_013192	Leucine-rich repeat-containing protein 6. (228 aa)
	APZ42_013218	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (394 aa)
	APZ42_012917	Uncharacterized protein. (542 aa)
	APZ42_012474	Uncharacterized protein. (175 aa)
	APZ42_012312	Uncharacterized protein. (837 aa)
	APZ42_012185	Neprilysin 5. (1623 aa)
	APZ42_011278	Protein FAM151A. (611 aa)
	APZ42_011285	Protein FAM151A. (358 aa)
	APZ42_011435	Uncharacterized protein. (203 aa)
	APZ42_011479	Putative Homeobox protein prophet of Pit-1. (371 aa)
	APZ42_011068	Microtubule-associated protein. (298 aa)
	APZ42_010189	Integrase_H2C2 domain-containing protein. (254 aa)
	APZ42_009313	Reverse transcriptase domain-containing protein. (122 aa)
	APZ42_007670	Uncharacterized protein. (256 aa)
	APZ42_005654	Reverse transcriptase domain-containing protein. (114 aa)
	APZ42_004269	Reverse transcriptase domain-containing protein. (112 aa)
	APZ42_004212	26S proteasome non-ATPase regulatory subunit 7. (313 aa)
	APZ42_002051	Neurexin-2-alpha. (256 aa)
	APZ42_001722	Putative Presenilin. (124 aa)
	APZ42_001004	Uncharacterized protein. (176 aa)
	APZ42_034340	Smoothened protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1054 aa)
	APZ42_034372	Neprilysin. (777 aa)
	APZ42_034132	Matrix metalloproteinase-24. (652 aa)
	APZ42_033871	Leucine-rich repeat kinase. (2541 aa)
	APZ42_033595	Ubiquitin modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family. (1062 aa)
	APZ42_033167	Uncharacterized protein. (887 aa)
	APZ42_033072	Uncharacterized protein. (457 aa)
	APZ42_032432	Protein stum. (364 aa)
	APZ42_031987	Transmembrane protein 222. (156 aa)
	APZ42_031649	DUF5641 domain-containing protein. (892 aa)
	APZ42_031492	Uncharacterized protein. (494 aa)
	APZ42_030705	Calcium/calmodulin-dependent protein kinase type II alpha chain. (507 aa)
	APZ42_030114	Ena/VASP-like protein. (436 aa)
	APZ42_029255	Protein FAM151A. (362 aa)
	APZ42_029259	Uncharacterized protein. (278 aa)
	APZ42_029283	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (366 aa)
	APZ42_029111	C2H2-type domain-containing protein. (2141 aa)
	APZ42_029140	Uncharacterized protein. (683 aa)
	APZ42_029058	Putative Ankyrin repeat domain-containing protein 50. (1629 aa)
	APZ42_028908	DUF5641 domain-containing protein. (257 aa)
	APZ42_028866	Neprilysin 5. (831 aa)
	APZ42_028450	Integrase catalytic domain-containing protein. (2467 aa)
	APZ42_025283	Reverse transcriptase domain-containing protein. (1360 aa)
	APZ42_024747	Fragile X mental retardation Syndrome-related protein. (637 aa)
	APZ42_031393	Transmembrane protein 185A. (353 aa)
	APZ42_025752	SH3 and multiple ankyrin repeat domains protein. (1688 aa)
	APZ42_022208	Transmembrane protein 60. (133 aa)
	EOG090X04HR	Vesicular inhibitory amino acid transporter. (501 aa)
	APZ42_022822	Uncharacterized protein. (232 aa)
	EOG090X09ZU	Alpha/beta hydrolase domain-containing protein. (359 aa)
	APZ42_032183	Putative AP2-associated protein kinase. (692 aa)
	APZ42_022196	Neurochondrin. (730 aa)
	APZ42_015075	Anion exchange protein. (1071 aa)
	APZ42_026048	Putative Active breakpoint cluster region-related protein. (1145 aa)
	APZ42_011811	Putative Spindle assembly abnormal 4. (873 aa)
	APZ42_032865	Integrin beta; Belongs to the integrin beta chain family. (810 aa)
	APZ42_030255	Integrin beta; Belongs to the integrin beta chain family. (791 aa)
	APZ42_019458	Putative Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (190 aa)
	APZ42_015259	Glutamate receptor ionotropic, kainate; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (943 aa)
	APZ42_010055	Reverse transcriptase domain-containing protein. (122 aa)
	APZ42_007278	Integrase catalytic domain-containing protein. (312 aa)
	APZ42_004786	DUF5641 domain-containing protein. (200 aa)
	APZ42_006343	Uncharacterized protein. (113 aa)
	APZ42_011970	Neutral endopeptidase-like protein. (705 aa)
	APZ42_007778	Uncharacterized protein. (145 aa)
	APZ42_006342	Uncharacterized protein. (122 aa)
	APZ42_027869	Headcase protein. (284 aa)
	APZ42_026829	Lipocln_cytosolic_FA-bd_dom domain-containing protein. (128 aa)
	APZ42_031172	Girdin. (1617 aa)
	APZ42_014363	Integrin beta; Belongs to the integrin beta chain family. (614 aa)
	APZ42_015627	Reverse transcriptase domain-containing protein. (1064 aa)
	APZ42_015083	Anion exchange protein. (1204 aa)
	APZ42_015454	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (983 aa)
	APZ42_014122	Uncharacterized protein. (810 aa)
	APZ42_018883	Semaphorin-5c. (1047 aa)
	APZ42_014156	Uncharacterized protein. (2453 aa)
	APZ42_019862	Phosphatidylinositide phosphatase SAC1. (317 aa)
	APZ42_019834	EF-hand domain-containing protein. (325 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001722	APZ42_011068	A0A164ISJ8	A0A162T6H4	Putative Presenilin.	Microtubule-associated protein.	0.501
APZ42_001722	APZ42_033871	A0A164ISJ8	A0A164KNT3	Putative Presenilin.	Leucine-rich repeat kinase.	0.557
APZ42_002051	APZ42_017726	A0A164IJN5	A0A164ZLW9	Neurexin-2-alpha.	Neurexin-2-alpha.	0.899
APZ42_002051	APZ42_030705	A0A164IJN5	A0A164NIK1	Neurexin-2-alpha.	Calcium/calmodulin-dependent protein kinase type II alpha chain.	0.668
APZ42_002051	APZ42_033871	A0A164IJN5	A0A164KNT3	Neurexin-2-alpha.	Leucine-rich repeat kinase.	0.688
APZ42_004212	APZ42_033595	A0A164H788	A0A164KX14	26S proteasome non-ATPase regulatory subunit 7.	Ubiquitin modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.764
APZ42_004212	APZ42_033871	A0A164H788	A0A164KNT3	26S proteasome non-ATPase regulatory subunit 7.	Leucine-rich repeat kinase.	0.708
APZ42_011068	APZ42_001722	A0A162T6H4	A0A164ISJ8	Microtubule-associated protein.	Putative Presenilin.	0.501
APZ42_011068	APZ42_014122	A0A162T6H4	A0A162Q0D6	Microtubule-associated protein.	Uncharacterized protein.	0.561
APZ42_011068	APZ42_014156	A0A162T6H4	A0A162Q0F2	Microtubule-associated protein.	Uncharacterized protein.	0.561
APZ42_011068	APZ42_029283	A0A162T6H4	A0A164PTR6	Microtubule-associated protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.501
APZ42_011068	APZ42_030705	A0A162T6H4	A0A164NIK1	Microtubule-associated protein.	Calcium/calmodulin-dependent protein kinase type II alpha chain.	0.819
APZ42_011068	APZ42_033871	A0A162T6H4	A0A164KNT3	Microtubule-associated protein.	Leucine-rich repeat kinase.	0.681
APZ42_011278	APZ42_023488	A0A162SJN3	A0A164UXW4	Protein FAM151A.	Neuroglian.	0.410
APZ42_011285	APZ42_023488	A0A162SJP8	A0A164UXW4	Protein FAM151A.	Neuroglian.	0.410
APZ42_011811	APZ42_032183	A0A0P5XKK0	A0A0P5P6X5	Putative Spindle assembly abnormal 4.	Putative AP2-associated protein kinase.	0.718
APZ42_011811	APZ42_033871	A0A0P5XKK0	A0A164KNT3	Putative Spindle assembly abnormal 4.	Leucine-rich repeat kinase.	0.709
APZ42_012474	APZ42_033871	A0A162RVC5	A0A164KNT3	Uncharacterized protein.	Leucine-rich repeat kinase.	0.449
APZ42_012474	EOG090X04HR	A0A162RVC5	A0A0P4Z960	Uncharacterized protein.	Vesicular inhibitory amino acid transporter.	0.444
APZ42_013192	APZ42_014363	A0A162R2Z1	A0A162EJD3	Leucine-rich repeat-containing protein 6.	Integrin beta; Belongs to the integrin beta chain family.	0.429