(20 nodes) Plasma lipoprotein particle network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_029496	3-hydroxy-3-methylglutaryl coenzyme A reductase. (868 aa)
	APZ42_034126	Very Low-density lipoprotein receptor. (887 aa)
	APZ42_025753	Low-density lipoprotein receptor-related protein 6. (1758 aa)
	APZ42_022801	Lactosylceramide. (369 aa)
	APZ42_031375	Lactosylceramide. (369 aa)
	APZ42_024026	Lactosylceramide 4-alpha-galactosyltransferase. (405 aa)
	APZ42_033027	Lactosylceramide 4-alpha-galactosyltransferase. (396 aa)
	APZ42_020186	Alpha-1,4-N-acetylglucosaminyltransferase. (403 aa)
	APZ42_012146	Vitellogenin domain-containing protein. (669 aa)
	APZ42_012157	VWFD domain-containing protein. (564 aa)
	APZ42_002789	Vitellogenin domain-containing protein. (167 aa)
	APZ42_001817	Low-density lipoprotein receptor-related protein 2. (214 aa)
	APZ42_000379	Alpha4GT1. (370 aa)
	APZ42_033290	Alpha4GT1. (397 aa)
	APZ42_028941	Low-density lipoprotein receptor-related protein 2. (4788 aa)
	APZ42_028294	Uncharacterized protein. (1392 aa)
	APZ42_024115	Low-density lipoprotein receptor-related protein 2. (1403 aa)
	APZ42_024105	Low-density lipoprotein receptor-related protein 2. (4941 aa)
	APZ42_022820	Lactosylceramide 4-alpha-galactosyltransferase. (363 aa)
	APZ42_018367	Uncharacterized protein. (391 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001817	APZ42_024105	A0A164IQA7	A0A164UH83	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.903
APZ42_001817	APZ42_024115	A0A164IQA7	A0A164UH25	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.569
APZ42_001817	APZ42_025753	A0A164IQA7	A0A0P4YGB1	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 6.	0.617
APZ42_024105	APZ42_001817	A0A164UH83	A0A164IQA7	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.903
APZ42_024115	APZ42_001817	A0A164UH25	A0A164IQA7	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.569
APZ42_025753	APZ42_001817	A0A0P4YGB1	A0A164IQA7	Low-density lipoprotein receptor-related protein 6.	Low-density lipoprotein receptor-related protein 2.	0.617