(14 nodes) Site of double-strand break network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_024255	RING-type domain-containing protein. (189 aa)
	APZ42_032613	Replication protein A 14 kDa subunit. (111 aa)
	APZ42_030575	RING-type domain-containing protein. (460 aa)
	APZ42_032823	DNA damage-binding protein 1. (1362 aa)
	APZ42_030747	RING-type domain-containing protein. (321 aa)
	APZ42_016304	Tonsoku-like protein. (1106 aa)
	APZ42_023331	JmjC domain-containing protein. (305 aa)
	APZ42_027118	Uncharacterized protein. (698 aa)
	APZ42_027863	Tonsoku protein. (168 aa)
	APZ42_013658	BRCT domain-containing protein. (1286 aa)
	APZ42_005834	RING-type domain-containing protein. (348 aa)
	APZ42_001590	DNA damage-binding protein 1. (70 aa)
	APZ42_001363	Putative Lysine-specific demethylase 4B. (324 aa)
	APZ42_034451	DNA polymerase eta. (757 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001363	APZ42_005834	A0A164J1C4	A0A164G8D1	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.421
APZ42_001363	APZ42_013658	A0A164J1C4	A0A162QR19	Putative Lysine-specific demethylase 4B.	BRCT domain-containing protein.	0.551
APZ42_001363	APZ42_024255	A0A164J1C4	A0A162DGI1	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.421
APZ42_001363	APZ42_027118	A0A164J1C4	A0A164RAD0	Putative Lysine-specific demethylase 4B.	Uncharacterized protein.	0.421
APZ42_001363	APZ42_030575	A0A164J1C4	A0A162D2T0	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.550
APZ42_001363	APZ42_030747	A0A164J1C4	A0A164NAX7	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.421
APZ42_001590	APZ42_032613	A0A164IVK8	A0A0P5ST08	DNA damage-binding protein 1.	Replication protein A 14 kDa subunit.	0.660
APZ42_001590	APZ42_032823	A0A164IVK8	A0A164LX96	DNA damage-binding protein 1.	DNA damage-binding protein 1.	0.430
APZ42_005834	APZ42_001363	A0A164G8D1	A0A164J1C4	RING-type domain-containing protein.	Putative Lysine-specific demethylase 4B.	0.421
APZ42_005834	APZ42_013658	A0A164G8D1	A0A162QR19	RING-type domain-containing protein.	BRCT domain-containing protein.	0.747
APZ42_005834	APZ42_023331	A0A164G8D1	A0A164V1N2	RING-type domain-containing protein.	JmjC domain-containing protein.	0.421
APZ42_005834	APZ42_030575	A0A164G8D1	A0A162D2T0	RING-type domain-containing protein.	RING-type domain-containing protein.	0.636
APZ42_013658	APZ42_001363	A0A162QR19	A0A164J1C4	BRCT domain-containing protein.	Putative Lysine-specific demethylase 4B.	0.551
APZ42_013658	APZ42_005834	A0A162QR19	A0A164G8D1	BRCT domain-containing protein.	RING-type domain-containing protein.	0.747
APZ42_013658	APZ42_023331	A0A162QR19	A0A164V1N2	BRCT domain-containing protein.	JmjC domain-containing protein.	0.551
APZ42_013658	APZ42_024255	A0A162QR19	A0A162DGI1	BRCT domain-containing protein.	RING-type domain-containing protein.	0.747
APZ42_013658	APZ42_027118	A0A162QR19	A0A164RAD0	BRCT domain-containing protein.	Uncharacterized protein.	0.747
APZ42_013658	APZ42_030575	A0A162QR19	A0A162D2T0	BRCT domain-containing protein.	RING-type domain-containing protein.	0.916
APZ42_013658	APZ42_030747	A0A162QR19	A0A164NAX7	BRCT domain-containing protein.	RING-type domain-containing protein.	0.747
APZ42_016304	APZ42_027863	A0A165ACY3	A0A164R0J5	Tonsoku-like protein.	Tonsoku protein.	0.763