(10 nodes) Fusome network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_019947	Uncharacterized protein. (891 aa)
	APZ42_031668	Glycogen synthase kinase-3 beta; Belongs to the protein kinase superfamily. (459 aa)
	APZ42_031946	Putative Cysteine proteinase; Belongs to the peptidase C1 family. (2136 aa)
	EOG090X0AUC	Surfeit locus protein 4. (272 aa)
	APZ42_018608	Reticulon-like protein. (453 aa)
	APZ42_014946	Non-specific serine/threonine protein kinase. (880 aa)
	APZ42_012798	Tropomodulin-1-like protein. (95 aa)
	APZ42_023495	Putative SH3 domain-containing kinase-binding protein. (650 aa)
	EOG090X093U	Tropomodulin. (384 aa)
	APZ42_016668	Putative Glycerol-3-phosphate acyltransferase. (539 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_019947	APZ42_031946	A0A164XVQ5	A0A0N8CZ78	Uncharacterized protein.	Putative Cysteine proteinase; Belongs to the peptidase C1 family.	0.513
APZ42_023495	APZ42_031668	A0A164UYC0	A0A0N8BHN0	Putative SH3 domain-containing kinase-binding protein.	Glycogen synthase kinase-3 beta; Belongs to the protein kinase superfamily.	0.534
APZ42_031668	APZ42_023495	A0A0N8BHN0	A0A164UYC0	Glycogen synthase kinase-3 beta; Belongs to the protein kinase superfamily.	Putative SH3 domain-containing kinase-binding protein.	0.534
APZ42_031946	APZ42_019947	A0A0N8CZ78	A0A164XVQ5	Putative Cysteine proteinase; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.513