(11 nodes) Neuropeptide Y receptor family network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_018047	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family. (368 aa)
	APZ42_033509	Pyroglutamylated RFamide peptide receptor; Belongs to the G-protein coupled receptor 1 family. (514 aa)
	APZ42_018929	Class a rhodopsin g-protein coupled receptor gprllk; Belongs to the G-protein coupled receptor 1 family. (617 aa)
	APZ42_014200	Neuropeptide FF receptor 2. (466 aa)
	APZ42_032647	Neuropeptide Y receptor type; Belongs to the G-protein coupled receptor 1 family. (550 aa)
	APZ42_030900	Neuropeptide Y receptor type; Belongs to the G-protein coupled receptor 1 family. (499 aa)
	APZ42_018931	Neuropeptides capa receptor; Belongs to the G-protein coupled receptor 1 family. (655 aa)
	APZ42_014957	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family. (508 aa)
	APZ42_026781	NPFG-protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family. (532 aa)
	APZ42_024124	NPFG-protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family. (382 aa)
	APZ42_021102	p2Y purinoceptor 12; Belongs to the G-protein coupled receptor 1 family. (409 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_014200	APZ42_014957	A0A0P5DS31	A0A162P288	Neuropeptide FF receptor 2.	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.718
APZ42_014200	APZ42_018047	A0A0P5DS31	A0A0P6CDF0	Neuropeptide FF receptor 2.	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family.	0.552
APZ42_014200	APZ42_018929	A0A0P5DS31	A0A0N7ZK52	Neuropeptide FF receptor 2.	Class a rhodopsin g-protein coupled receptor gprllk; Belongs to the G-protein coupled receptor 1 family.	0.656
APZ42_014200	APZ42_018931	A0A0P5DS31	A0A162CQ51	Neuropeptide FF receptor 2.	Neuropeptides capa receptor; Belongs to the G-protein coupled receptor 1 family.	0.655
APZ42_014200	APZ42_024124	A0A0P5DS31	A0A164UGJ8	Neuropeptide FF receptor 2.	NPFG-protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family.	0.550
APZ42_014200	APZ42_026781	A0A0P5DS31	A0A164RXS6	Neuropeptide FF receptor 2.	NPFG-protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family.	0.552
APZ42_014200	APZ42_030900	A0A0P5DS31	A0A0P6C9L9	Neuropeptide FF receptor 2.	Neuropeptide Y receptor type; Belongs to the G-protein coupled receptor 1 family.	0.548
APZ42_014957	APZ42_014200	A0A162P288	A0A0P5DS31	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Neuropeptide FF receptor 2.	0.718
APZ42_014957	APZ42_018047	A0A162P288	A0A0P6CDF0	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family.	0.501
APZ42_014957	APZ42_018929	A0A162P288	A0A0N7ZK52	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Class a rhodopsin g-protein coupled receptor gprllk; Belongs to the G-protein coupled receptor 1 family.	0.581
APZ42_014957	APZ42_018931	A0A162P288	A0A162CQ51	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Neuropeptides capa receptor; Belongs to the G-protein coupled receptor 1 family.	0.581
APZ42_014957	APZ42_024124	A0A162P288	A0A164UGJ8	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	NPFG-protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family.	0.501
APZ42_014957	APZ42_026781	A0A162P288	A0A164RXS6	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	NPFG-protein-coupled receptor; Belongs to the G-protein coupled receptor 1 family.	0.501
APZ42_014957	APZ42_030900	A0A162P288	A0A0P6C9L9	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Neuropeptide Y receptor type; Belongs to the G-protein coupled receptor 1 family.	0.501
APZ42_018047	APZ42_014200	A0A0P6CDF0	A0A0P5DS31	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family.	Neuropeptide FF receptor 2.	0.552
APZ42_018047	APZ42_014957	A0A0P6CDF0	A0A162P288	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family.	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.501
APZ42_018047	APZ42_032647	A0A0P6CDF0	A0A0P5T600	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family.	Neuropeptide Y receptor type; Belongs to the G-protein coupled receptor 1 family.	0.616
APZ42_018047	APZ42_033509	A0A0P6CDF0	A0A0N7ZJ72	Putative Class A rhodopsin G-protein-coupled receptor GPRnna8; Belongs to the G-protein coupled receptor 1 family.	Pyroglutamylated RFamide peptide receptor; Belongs to the G-protein coupled receptor 1 family.	0.501
APZ42_018929	APZ42_014200	A0A0N7ZK52	A0A0P5DS31	Class a rhodopsin g-protein coupled receptor gprllk; Belongs to the G-protein coupled receptor 1 family.	Neuropeptide FF receptor 2.	0.656
APZ42_018929	APZ42_014957	A0A0N7ZK52	A0A162P288	Class a rhodopsin g-protein coupled receptor gprllk; Belongs to the G-protein coupled receptor 1 family.	G-protein coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.581