(24 nodes) SANT/Myb domain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_016587	Transcriptional adapter. (387 aa)
	APZ42_011793	Uncharacterized protein. (2828 aa)
	APZ42_011612	Putative Myb-related protein B. (823 aa)
	APZ42_011918	Uncharacterized protein. (574 aa)
	APZ42_019853	Nuclear receptor corepressor. (2125 aa)
	APZ42_024151	DnaJ subfamily C member 2. (645 aa)
	APZ42_028242	Putative Metastasis-associated protein MTA1. (872 aa)
	APZ42_021853	ZZ-type zinc finger-containing protein. (413 aa)
	APZ42_016873	Histone-lysine N-methyltransferase E(Z). (1030 aa)
	APZ42_012182	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member. (1043 aa)
	APZ42_022453	Cell division cycle 5-like protein. (804 aa)
	APZ42_028349	REST corepressor 3. (474 aa)
	APZ42_016807	SANT domain-containing protein. (711 aa)
	APZ42_017698	Zinc finger PLAGL2-like protein. (1247 aa)
	APZ42_017895	Myb-like domain-containing protein. (199 aa)
	APZ42_017885	Uncharacterized protein. (554 aa)
	APZ42_019496	Transcriptional adapter 2-beta. (629 aa)
	APZ42_021741	SWI/SNF complex subunit SMARCC1. (1090 aa)
	APZ42_022422	C2H2-type domain-containing protein. (588 aa)
	APZ42_023454	Uncharacterized protein. (494 aa)
	APZ42_024998	Putative Atrial natriuretic peptide receptor. (808 aa)
	APZ42_026329	DnaJ subfamily C member 1. (491 aa)
	APZ42_032694	Uncharacterized protein. (865 aa)
	APZ42_009775	Myb-like domain-containing protein. (114 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011793	APZ42_012182	A0A162T115	A0A0P4Y4S5	Uncharacterized protein.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	0.679
APZ42_011793	APZ42_019853	A0A162T115	A0A0P6A9W1	Uncharacterized protein.	Nuclear receptor corepressor.	0.430
APZ42_011793	APZ42_028242	A0A162T115	A0A0P5UUK1	Uncharacterized protein.	Putative Metastasis-associated protein MTA1.	0.627
APZ42_011793	APZ42_028349	A0A162T115	A0A0N8ATZ6	Uncharacterized protein.	REST corepressor 3.	0.634
APZ42_011793	APZ42_032694	A0A162T115	A0A164LSX9	Uncharacterized protein.	Uncharacterized protein.	0.711
APZ42_011918	APZ42_016807	A0A162SDM4	A0A165A5Q3	Uncharacterized protein.	SANT domain-containing protein.	0.740
APZ42_012182	APZ42_011793	A0A0P4Y4S5	A0A162T115	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	Uncharacterized protein.	0.679
APZ42_012182	APZ42_016873	A0A0P4Y4S5	A0A0P5ACF4	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	Histone-lysine N-methyltransferase E(Z).	0.658
APZ42_012182	APZ42_019853	A0A0P4Y4S5	A0A0P6A9W1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	Nuclear receptor corepressor.	0.436
APZ42_012182	APZ42_021741	A0A0P4Y4S5	A0A164WHX5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	SWI/SNF complex subunit SMARCC1.	0.793
APZ42_012182	APZ42_023454	A0A0P4Y4S5	A0A164UWY8	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	Uncharacterized protein.	0.421
APZ42_012182	APZ42_028242	A0A0P4Y4S5	A0A0P5UUK1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	Putative Metastasis-associated protein MTA1.	0.670
APZ42_012182	APZ42_028349	A0A0P4Y4S5	A0A0N8ATZ6	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	REST corepressor 3.	0.663
APZ42_012182	APZ42_032694	A0A0P4Y4S5	A0A164LSX9	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member.	Uncharacterized protein.	0.763
APZ42_016587	APZ42_019853	A0A0N7ZJ05	A0A0P6A9W1	Transcriptional adapter.	Nuclear receptor corepressor.	0.937
APZ42_016587	APZ42_021853	A0A0N7ZJ05	A0A0P5T830	Transcriptional adapter.	ZZ-type zinc finger-containing protein.	0.921
APZ42_016587	APZ42_024151	A0A0N7ZJ05	A0A0P5ZAW4	Transcriptional adapter.	DnaJ subfamily C member 2.	0.566
APZ42_016587	APZ42_026329	A0A0N7ZJ05	A0A164SDC0	Transcriptional adapter.	DnaJ subfamily C member 1.	0.566
APZ42_016807	APZ42_011918	A0A165A5Q3	A0A162SDM4	SANT domain-containing protein.	Uncharacterized protein.	0.740
APZ42_016807	APZ42_032694	A0A165A5Q3	A0A164LSX9	SANT domain-containing protein.	Uncharacterized protein.	0.548