(52 nodes) ABC transporter-like, conserved site network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_002587	ABC protein, subfamily ABCH. (186 aa)
	APZ42_016202	Putative ABC protein, subfamily ABCG. (652 aa)
	APZ42_016496	ABC protein, subfamily ABCH. (733 aa)
	APZ42_016360	Putative ABC protein, subfamily ABCH. (739 aa)
	APZ42_016355	Putative ABC protein, subfamily ABCH. (734 aa)
	APZ42_016632	ABC protein, subfamily ABCD. (612 aa)
	APZ42_016990	ABC transporter. (1420 aa)
	APZ42_019389	ABC protein, subfamily ABCA. (2282 aa)
	APZ42_023747	ABC protein, subfamily ABCH. (794 aa)
	APZ42_025669	ABC protein, subfamily ABCH. (205 aa)
	APZ42_031016	ATP-binding cassette sub-family D member 2. (624 aa)
	APZ42_031948	ABC protein, subfamily ABCG. (727 aa)
	APZ42_032026	ABC protein, subfamily ABCH. (793 aa)
	APZ42_032027	Putative ABC protein, subfamily ABCH. (1270 aa)
	APZ42_034165	ATP-binding cassette, sub-family C, member 4. (666 aa)
	APZ42_034307	ATP-binding cassette sub-family G member 4. (699 aa)
	APZ42_034308	ABC protein, subfamily ABCG. (666 aa)
	APZ42_034377	Multidrug resistance protein 4. (1410 aa)
	APZ42_034388	ATP-binding cassette sub-family C member 11. (1404 aa)
	APZ42_004433	ABC protein, subfamily ABCG. (246 aa)
	APZ42_011965	ABC transporter. (661 aa)
	APZ42_011995	ATP-binding cassette sub-family C member 9. (1470 aa)
	APZ42_013171	ABC protein, subfamily ABCF. (716 aa)
	APZ42_013272	ATP-binding cassette sub-family F member 3. (965 aa)
	APZ42_015117	Uncharacterized protein. (1389 aa)
	APZ42_026114	ATP-binding cassette sub-family G member 2. (661 aa)
	APZ42_020157	Putative ABC protein, subfamily ABCC. (1153 aa)
	APZ42_020212	ATP-binding cassette sub-family E member 1. (610 aa)
	APZ42_021852	ATP-binding cassette sub-family B member 5. (1274 aa)
	APZ42_001270	ABC protein, subfamily ABCG. (221 aa)
	APZ42_008585	ABC transporter, subfamily ABCB/MDR. (344 aa)
	APZ42_012358	ATP-binding cassette sub-family F member 2. (614 aa)
	APZ42_026110	ATP-binding cassette sub-family G member. (654 aa)
	APZ42_013132	ABC transporter G family member. (779 aa)
	APZ42_033128	ATP-binding cassette sub-family G member 5. (625 aa)
	APZ42_018150	ATP-binding cassette sub-family A member. (1956 aa)
	APZ42_026323	ATP-binding cassette sub-family B member 6, mitochondrial. (851 aa)
	APZ42_016549	ABC transporter G family member. (782 aa)
	APZ42_016546	ABC transporter G family member. (775 aa)
	APZ42_023749	ABC transporter G family member. (832 aa)
	APZ42_013696	ATP-binding cassette sub-family F member 2. (684 aa)
	APZ42_026111	ATP-binding cassette sub-family G member 2. (658 aa)
	APZ42_012618	ATP-binding cassette sub-family G member 4. (692 aa)
	APZ42_031947	ATP-binding cassette sub-family G member. (648 aa)
	APZ42_016551	ABC transporter G family member. (770 aa)
	APZ42_019391	ATP-binding cassette sub-family A member. (2089 aa)
	APZ42_023750	ABC transporter G family member. (842 aa)
	APZ42_029502	ATP-binding cassette sub-family B member 8, mitochondrial. (677 aa)
	APZ42_023744	ABC transporter G family member. (889 aa)
	APZ42_032507	ATP-binding cassette sub-family A member. (1741 aa)
	APZ42_014628	ATP-binding cassette sub-family B member 7, mitochondrial. (700 aa)
	APZ42_026097	ATP-binding cassette sub-family D member. (762 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_008585	APZ42_011965	A0A162BSE4	A0A162SBT4	ABC transporter, subfamily ABCB/MDR.	ABC transporter.	0.539
APZ42_008585	APZ42_014628	A0A162BSE4	A0A0N7ZVR4	ABC transporter, subfamily ABCB/MDR.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.484
APZ42_008585	APZ42_026323	A0A162BSE4	A0A0P5Z0R9	ABC transporter, subfamily ABCB/MDR.	ATP-binding cassette sub-family B member 6, mitochondrial.	0.430
APZ42_008585	APZ42_029502	A0A162BSE4	A0A0P4XS94	ABC transporter, subfamily ABCB/MDR.	ATP-binding cassette sub-family B member 8, mitochondrial.	0.543
APZ42_011965	APZ42_008585	A0A162SBT4	A0A162BSE4	ABC transporter.	ABC transporter, subfamily ABCB/MDR.	0.539
APZ42_011965	APZ42_014628	A0A162SBT4	A0A0N7ZVR4	ABC transporter.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.722
APZ42_011965	APZ42_015117	A0A162SBT4	A0A162P740	ABC transporter.	Uncharacterized protein.	0.519
APZ42_011965	APZ42_020212	A0A162SBT4	A0A162CEJ2	ABC transporter.	ATP-binding cassette sub-family E member 1.	0.577
APZ42_011965	APZ42_021852	A0A162SBT4	A0A162C9G9	ABC transporter.	ATP-binding cassette sub-family B member 5.	0.519
APZ42_011965	APZ42_026323	A0A162SBT4	A0A0P5Z0R9	ABC transporter.	ATP-binding cassette sub-family B member 6, mitochondrial.	0.600
APZ42_011995	APZ42_014628	A0A162SB63	A0A0N7ZVR4	ATP-binding cassette sub-family C member 9.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.410
APZ42_011995	APZ42_026323	A0A162SB63	A0A0P5Z0R9	ATP-binding cassette sub-family C member 9.	ATP-binding cassette sub-family B member 6, mitochondrial.	0.414
APZ42_012358	APZ42_013171	A0A0P6G7N3	A0A162R3D8	ATP-binding cassette sub-family F member 2.	ABC protein, subfamily ABCF.	0.521
APZ42_012358	APZ42_014628	A0A0P6G7N3	A0A0N7ZVR4	ATP-binding cassette sub-family F member 2.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.549
APZ42_012358	APZ42_020212	A0A0P6G7N3	A0A162CEJ2	ATP-binding cassette sub-family F member 2.	ATP-binding cassette sub-family E member 1.	0.971
APZ42_013171	APZ42_012358	A0A162R3D8	A0A0P6G7N3	ABC protein, subfamily ABCF.	ATP-binding cassette sub-family F member 2.	0.521
APZ42_013171	APZ42_014628	A0A162R3D8	A0A0N7ZVR4	ABC protein, subfamily ABCF.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.536
APZ42_013171	APZ42_020212	A0A162R3D8	A0A162CEJ2	ABC protein, subfamily ABCF.	ATP-binding cassette sub-family E member 1.	0.774
APZ42_013171	APZ42_026323	A0A162R3D8	A0A0P5Z0R9	ABC protein, subfamily ABCF.	ATP-binding cassette sub-family B member 6, mitochondrial.	0.529
APZ42_013272	APZ42_014628	A0A162R114	A0A0N7ZVR4	ATP-binding cassette sub-family F member 3.	ATP-binding cassette sub-family B member 7, mitochondrial.	0.420