(11 nodes) Cyclic nucleotide-binding, conserved site network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_011684	cAMP-dependent protein kinase type II regulatory subunit. (305 aa)
	APZ42_016768	Cyclic-nucleotide-gated ion channel protein. (708 aa)
	APZ42_017997	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4. (662 aa)
	APZ42_021539	cAMP-dependent protein kinase type I regulatory subunit. (331 aa)
	APZ42_027123	Putative Cyclic nucleotide-gated cation channel alpha-3. (986 aa)
	APZ42_028077	Putative Serine/threonine-protein kinase. (1103 aa)
	APZ42_033662	Putative Cyclic nucleotide-gated cation channel beta-3. (1183 aa)
	APZ42_034130	Cyclic nucleotide-binding domain-containing protein. (1811 aa)
	APZ42_001748	Putative cAMP-dependent protein kinase type I regulatory subunit. (99 aa)
	APZ42_001841	cGMP-dependent protein kinase. (330 aa)
	APZ42_020987	cGMP-dependent protein kinase. (716 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_016768	APZ42_033662	A0A165A4M6	A0A164KRA4	Cyclic-nucleotide-gated ion channel protein.	Putative Cyclic nucleotide-gated cation channel beta-3.	0.974
APZ42_027123	APZ42_033662	A0A164RAK2	A0A164KRA4	Putative Cyclic nucleotide-gated cation channel alpha-3.	Putative Cyclic nucleotide-gated cation channel beta-3.	0.974
APZ42_033662	APZ42_016768	A0A164KRA4	A0A165A4M6	Putative Cyclic nucleotide-gated cation channel beta-3.	Cyclic-nucleotide-gated ion channel protein.	0.974
APZ42_033662	APZ42_027123	A0A164KRA4	A0A164RAK2	Putative Cyclic nucleotide-gated cation channel beta-3.	Putative Cyclic nucleotide-gated cation channel alpha-3.	0.974
APZ42_033662	APZ42_034130	A0A164KRA4	A0A164KH55	Putative Cyclic nucleotide-gated cation channel beta-3.	Cyclic nucleotide-binding domain-containing protein.	0.962
APZ42_034130	APZ42_033662	A0A164KH55	A0A164KRA4	Cyclic nucleotide-binding domain-containing protein.	Putative Cyclic nucleotide-gated cation channel beta-3.	0.962