(12 nodes) FERM, C-terminal PH-like domain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_013462	Tyrosine-protein phosphatase non-receptor type 14. (724 aa)
	APZ42_028584	Putative FERM domain-containing protein 5. (668 aa)
	APZ42_034129	Moesin/ezrin/radixin. (669 aa)
	APZ42_025323	Band 4.1 protein 4B. (809 aa)
	APZ42_003109	Putative Expanded protein. (220 aa)
	APZ42_015989	E3 ubiquitin-protein ligase MYLIP. (469 aa)
	APZ42_012356	4.1 protein. (943 aa)
	APZ42_007037	Moesin/ezrin/radixin 1. (258 aa)
	APZ42_032864	Putative FERM domain-containing protein 4B. (1194 aa)
	APZ42_029345	Tyrosine-protein phosphatase. (813 aa)
	APZ42_028237	FERM, RhoGEF and pleckstrin domain-containing protein 1. (1606 aa)
	APZ42_026854	FERM domain-containing 4A-like protein. (1047 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_003109	APZ42_007037	A0A162CXG0	A0A164FJY2	Putative Expanded protein.	Moesin/ezrin/radixin 1.	0.628
APZ42_003109	APZ42_013462	A0A162CXG0	A0A162QUD5	Putative Expanded protein.	Tyrosine-protein phosphatase non-receptor type 14.	0.519
APZ42_003109	APZ42_032864	A0A162CXG0	A0A164LYB4	Putative Expanded protein.	Putative FERM domain-containing protein 4B.	0.613
APZ42_003109	APZ42_034129	A0A162CXG0	A0A0P5N1U0	Putative Expanded protein.	Moesin/ezrin/radixin.	0.728
APZ42_007037	APZ42_003109	A0A164FJY2	A0A162CXG0	Moesin/ezrin/radixin 1.	Putative Expanded protein.	0.628
APZ42_012356	APZ42_025323	A0A162RWT3	A0A0P6DK42	4.1 protein.	Band 4.1 protein 4B.	0.650
APZ42_012356	APZ42_026854	A0A162RWT3	A0A164RZS5	4.1 protein.	FERM domain-containing 4A-like protein.	0.650
APZ42_012356	APZ42_028584	A0A162RWT3	A0A0P5ANE6	4.1 protein.	Putative FERM domain-containing protein 5.	0.628
APZ42_013462	APZ42_003109	A0A162QUD5	A0A162CXG0	Tyrosine-protein phosphatase non-receptor type 14.	Putative Expanded protein.	0.519
APZ42_025323	APZ42_012356	A0A0P6DK42	A0A162RWT3	Band 4.1 protein 4B.	4.1 protein.	0.650
APZ42_026854	APZ42_012356	A0A164RZS5	A0A162RWT3	FERM domain-containing 4A-like protein.	4.1 protein.	0.650
APZ42_028584	APZ42_012356	A0A0P5ANE6	A0A162RWT3	Putative FERM domain-containing protein 5.	4.1 protein.	0.628
APZ42_029345	APZ42_032864	A0A164PGX7	A0A164LYB4	Tyrosine-protein phosphatase.	Putative FERM domain-containing protein 4B.	0.522
APZ42_032864	APZ42_003109	A0A164LYB4	A0A162CXG0	Putative FERM domain-containing protein 4B.	Putative Expanded protein.	0.613
APZ42_032864	APZ42_029345	A0A164LYB4	A0A164PGX7	Putative FERM domain-containing protein 4B.	Tyrosine-protein phosphatase.	0.522
APZ42_034129	APZ42_003109	A0A0P5N1U0	A0A162CXG0	Moesin/ezrin/radixin.	Putative Expanded protein.	0.728