(15 nodes) Chromo domain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_019189	Chromodomain-Helicase-DNA-binding protein Mi-2. (1951 aa)
	APZ42_017334	Chromobox protein. (203 aa)
	APZ42_009612	Chromo domain-containing protein. (77 aa)
	APZ42_012468	Chromobox protein. (206 aa)
	APZ42_008534	Chromo domain-containing protein. (71 aa)
	APZ42_034293	Uncharacterized protein. (260 aa)
	APZ42_033961	Chromo domain-containing protein. (171 aa)
	APZ42_031295	Chromobox protein. (207 aa)
	APZ42_031296	Putative Chromobox protein. (245 aa)
	APZ42_027419	Chromodomain-Helicase-DNA-binding protein. (4505 aa)
	APZ42_026696	Chromo domain-containing protein. (70 aa)
	APZ42_022736	Chromobox-like protein. (221 aa)
	APZ42_022749	Chromobox protein 5-like protein. (178 aa)
	APZ42_019413	Chromo domain-containing protein. (601 aa)
	APZ42_017610	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (519 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_012468	APZ42_017610	A0A162RUF0	A0A164ZYS4	Chromobox protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.800
APZ42_012468	APZ42_019189	A0A162RUF0	A0A164YDQ3	Chromobox protein.	Chromodomain-Helicase-DNA-binding protein Mi-2.	0.678
APZ42_017334	APZ42_017610	A0A0P5K2I9	A0A164ZYS4	Chromobox protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.800
APZ42_017334	APZ42_019189	A0A0P5K2I9	A0A164YDQ3	Chromobox protein.	Chromodomain-Helicase-DNA-binding protein Mi-2.	0.678
APZ42_017610	APZ42_012468	A0A164ZYS4	A0A162RUF0	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Chromobox protein.	0.800
APZ42_017610	APZ42_017334	A0A164ZYS4	A0A0P5K2I9	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Chromobox protein.	0.800
APZ42_017610	APZ42_019189	A0A164ZYS4	A0A164YDQ3	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Chromodomain-Helicase-DNA-binding protein Mi-2.	0.649
APZ42_017610	APZ42_022736	A0A164ZYS4	A0A164VS17	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Chromobox-like protein.	0.779
APZ42_017610	APZ42_022749	A0A164ZYS4	A0A164VS30	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Chromobox protein 5-like protein.	0.800
APZ42_017610	APZ42_031295	A0A164ZYS4	A0A164MYH3	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Chromobox protein.	0.800
APZ42_017610	APZ42_031296	A0A164ZYS4	A0A164MYK1	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Putative Chromobox protein.	0.800
APZ42_017610	APZ42_034293	A0A164ZYS4	A0A164K9B9	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	Uncharacterized protein.	0.641
APZ42_019189	APZ42_012468	A0A164YDQ3	A0A162RUF0	Chromodomain-Helicase-DNA-binding protein Mi-2.	Chromobox protein.	0.678
APZ42_019189	APZ42_017334	A0A164YDQ3	A0A0P5K2I9	Chromodomain-Helicase-DNA-binding protein Mi-2.	Chromobox protein.	0.678
APZ42_019189	APZ42_017610	A0A164YDQ3	A0A164ZYS4	Chromodomain-Helicase-DNA-binding protein Mi-2.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.649
APZ42_019189	APZ42_022736	A0A164YDQ3	A0A164VS17	Chromodomain-Helicase-DNA-binding protein Mi-2.	Chromobox-like protein.	0.678
APZ42_019189	APZ42_022749	A0A164YDQ3	A0A164VS30	Chromodomain-Helicase-DNA-binding protein Mi-2.	Chromobox protein 5-like protein.	0.678
APZ42_019189	APZ42_027419	A0A164YDQ3	A0A164RKU9	Chromodomain-Helicase-DNA-binding protein Mi-2.	Chromodomain-Helicase-DNA-binding protein.	0.499
APZ42_019189	APZ42_031295	A0A164YDQ3	A0A164MYH3	Chromodomain-Helicase-DNA-binding protein Mi-2.	Chromobox protein.	0.678
APZ42_019189	APZ42_031296	A0A164YDQ3	A0A164MYK1	Chromodomain-Helicase-DNA-binding protein Mi-2.	Putative Chromobox protein.	0.678