(5 nodes) RNA binding activity-knot of a chromodomain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_030748	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (447 aa)
	APZ42_018393	AT-rich interactive domain-containing 4B-like protein. (1711 aa)
	APZ42_014764	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (479 aa)
	APZ42_012101	Mortality factor 4 1-like protein. (383 aa)
	APZ42_019264	Mortality factor 4 1-like protein. (356 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_012101	APZ42_014764	A0A0P5BN95	A0A162PKL5	Mortality factor 4 1-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.851
APZ42_012101	APZ42_018393	A0A0P5BN95	A0A164Z666	Mortality factor 4 1-like protein.	AT-rich interactive domain-containing 4B-like protein.	0.490
APZ42_012101	APZ42_030748	A0A0P5BN95	A0A164NB41	Mortality factor 4 1-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.932
APZ42_014764	APZ42_012101	A0A162PKL5	A0A0P5BN95	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Mortality factor 4 1-like protein.	0.851
APZ42_014764	APZ42_019264	A0A162PKL5	A0A0P5ETC0	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Mortality factor 4 1-like protein.	0.886
APZ42_018393	APZ42_012101	A0A164Z666	A0A0P5BN95	AT-rich interactive domain-containing 4B-like protein.	Mortality factor 4 1-like protein.	0.490
APZ42_018393	APZ42_019264	A0A164Z666	A0A0P5ETC0	AT-rich interactive domain-containing 4B-like protein.	Mortality factor 4 1-like protein.	0.493
APZ42_019264	APZ42_014764	A0A0P5ETC0	A0A162PKL5	Mortality factor 4 1-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.886
APZ42_019264	APZ42_018393	A0A0P5ETC0	A0A164Z666	Mortality factor 4 1-like protein.	AT-rich interactive domain-containing 4B-like protein.	0.493
APZ42_019264	APZ42_030748	A0A0P5ETC0	A0A164NB41	Mortality factor 4 1-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.907
APZ42_030748	APZ42_012101	A0A164NB41	A0A0P5BN95	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Mortality factor 4 1-like protein.	0.932
APZ42_030748	APZ42_019264	A0A164NB41	A0A0P5ETC0	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Mortality factor 4 1-like protein.	0.907