(25 nodes) Nuclear hormone receptor-like domain superfamily network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_027344	Uncharacterized protein. (1400 aa)
	APZ42_023433	Nuclear hormone receptor HR3. (222 aa)
	APZ42_022860	Putative Nuclear receptor subfamily 6 group A member 1. (1405 aa)
	APZ42_021910	Steroid receptor seven-up. (262 aa)
	APZ42_021855	Photoreceptor-specific nuclear receptor. (734 aa)
	APZ42_021359	Transcription factor HNF-4. (544 aa)
	APZ42_019968	Estrogen receptor beta. (399 aa)
	APZ42_016876	Bile acid receptor. (1102 aa)
	RXR	Retinoic acid receptor RXR-alpha-A. (400 aa)
	APZ42_027303	Retinoid x receptor. (699 aa)
	APZ42_010864	Nuclear receptor subfamily 4 group A member. (579 aa)
	APZ42_027305	Peroxisome proliferator-activated receptor delta. (722 aa)
	APZ42_031217	Oxysterols receptor LXR-alpha. (385 aa)
	APZ42_027517	Putative Ecdysone-induced protein 78C. (634 aa)
	APZ42_024580	Retinoid x receptor. (463 aa)
	APZ42_012187	Retinoid x receptor. (402 aa)
	APZ42_032642	Nuclear hormone receptor HR96. (522 aa)
	APZ42_013799	Estrogen-related receptor splice variant. (599 aa)
	DapmaFtz-F1	Nuclear receptor subfamily 6 group A member 1. (777 aa)
	APZ42_032570	Nuclear receptor subfamily 2 group E member. (477 aa)
	APZ42_018538	Nuclear receptor subfamily 0 group B member 2. (590 aa)
	APZ42_010867	Hormone receptor 51. (441 aa)
	APZ42_014763	Bile acid receptor. (657 aa)
	APZ42_011466	Putative Nuclear hormone receptor FTZ-F1 beta. (935 aa)
	APZ42_032772	Putative Nuclear receptor subfamily 4 group A member 3. (1994 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_010864	APZ42_016876	A0A0P5E5N7	A0A165A840	Nuclear receptor subfamily 4 group A member.	Bile acid receptor.	0.895
APZ42_010864	APZ42_027517	A0A0P5E5N7	A0A0P5TLZ6	Nuclear receptor subfamily 4 group A member.	Putative Ecdysone-induced protein 78C.	0.437
APZ42_010864	DapmaFtz-F1	A0A0P5E5N7	A0A0P6F3X0	Nuclear receptor subfamily 4 group A member.	Nuclear receptor subfamily 6 group A member 1.	0.632
APZ42_010864	RXR	A0A0P5E5N7	A1XQQ1	Nuclear receptor subfamily 4 group A member.	Retinoic acid receptor RXR-alpha-A.	0.971
APZ42_010867	APZ42_021855	A0A162D0F7	A0A164WB98	Hormone receptor 51.	Photoreceptor-specific nuclear receptor.	0.603
APZ42_010867	APZ42_027344	A0A162D0F7	A0A164RI89	Hormone receptor 51.	Uncharacterized protein.	0.643
APZ42_010867	APZ42_032570	A0A162D0F7	A0A0P6GDD9	Hormone receptor 51.	Nuclear receptor subfamily 2 group E member.	0.627
APZ42_010867	DapmaFtz-F1	A0A162D0F7	A0A0P6F3X0	Hormone receptor 51.	Nuclear receptor subfamily 6 group A member 1.	0.632
APZ42_011466	DapmaFtz-F1	A0A162SQ09	A0A0P6F3X0	Putative Nuclear hormone receptor FTZ-F1 beta.	Nuclear receptor subfamily 6 group A member 1.	0.635
APZ42_012187	APZ42_016876	A0A0P5WD63	A0A165A840	Retinoid x receptor.	Bile acid receptor.	0.840
APZ42_012187	APZ42_019968	A0A0P5WD63	A0A164XV36	Retinoid x receptor.	Estrogen receptor beta.	0.532
APZ42_012187	DapmaFtz-F1	A0A0P5WD63	A0A0P6F3X0	Retinoid x receptor.	Nuclear receptor subfamily 6 group A member 1.	0.638
APZ42_012187	RXR	A0A0P5WD63	A1XQQ1	Retinoid x receptor.	Retinoic acid receptor RXR-alpha-A.	0.856
APZ42_013799	DapmaFtz-F1	A0A0P6ASE0	A0A0P6F3X0	Estrogen-related receptor splice variant.	Nuclear receptor subfamily 6 group A member 1.	0.632
APZ42_014763	APZ42_016876	A0A162PLH6	A0A165A840	Bile acid receptor.	Bile acid receptor.	0.840
APZ42_014763	APZ42_021359	A0A162PLH6	A0A164WR93	Bile acid receptor.	Transcription factor HNF-4.	0.404
APZ42_014763	DapmaFtz-F1	A0A162PLH6	A0A0P6F3X0	Bile acid receptor.	Nuclear receptor subfamily 6 group A member 1.	0.693
APZ42_014763	RXR	A0A162PLH6	A1XQQ1	Bile acid receptor.	Retinoic acid receptor RXR-alpha-A.	0.988
APZ42_016876	APZ42_010864	A0A165A840	A0A0P5E5N7	Bile acid receptor.	Nuclear receptor subfamily 4 group A member.	0.895
APZ42_016876	APZ42_012187	A0A165A840	A0A0P5WD63	Bile acid receptor.	Retinoid x receptor.	0.840