(12 nodes) Zinc finger, RanBP2-type superfamily network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_016159	Spermatogenesis-associated protein 2 protein. (488 aa)
	APZ42_012662	Mitogen-activated protein kinase kinase kinase 7-interacting protein 2. (456 aa)
	APZ42_031762	E3 SUMO-protein ligase RanBP2. (2719 aa)
	APZ42_031077	Nuclear pore complex Nup153-like protein. (1496 aa)
	APZ42_026192	Nuclear protein localization protein 4. (622 aa)
	APZ42_023459	YY1-associated factor 2. (173 aa)
	APZ42_020709	RanBP2-type domain-containing protein. (256 aa)
	APZ42_015302	RNA-binding EWS-like protein. (491 aa)
	APZ42_032300	Calpain-15; Belongs to the peptidase C2 family. (970 aa)
	APZ42_020792	RNA-binding protein 10. (820 aa)
	APZ42_014302	E3 ubiquitin-protein ligase Mdm2. (274 aa)
	APZ42_019856	Zinc finger Ran-binding domain-containing protein 2. (272 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_014302	APZ42_031762	A0A0P5TGB9	A0A164MMU2	E3 ubiquitin-protein ligase Mdm2.	E3 SUMO-protein ligase RanBP2.	0.613
APZ42_015302	APZ42_020792	A0A162PCY6	A0A0P5Y2Z7	RNA-binding EWS-like protein.	RNA-binding protein 10.	0.718
APZ42_016159	APZ42_031762	A0A0N8CSS6	A0A164MMU2	Spermatogenesis-associated protein 2 protein.	E3 SUMO-protein ligase RanBP2.	0.782
APZ42_019856	APZ42_020792	A0A0P5C6R5	A0A0P5Y2Z7	Zinc finger Ran-binding domain-containing protein 2.	RNA-binding protein 10.	0.608
APZ42_020709	APZ42_031762	A0A164XC36	A0A164MMU2	RanBP2-type domain-containing protein.	E3 SUMO-protein ligase RanBP2.	0.622
APZ42_020792	APZ42_015302	A0A0P5Y2Z7	A0A162PCY6	RNA-binding protein 10.	RNA-binding EWS-like protein.	0.718
APZ42_020792	APZ42_019856	A0A0P5Y2Z7	A0A0P5C6R5	RNA-binding protein 10.	Zinc finger Ran-binding domain-containing protein 2.	0.608
APZ42_031077	APZ42_031762	A0A164N5J2	A0A164MMU2	Nuclear pore complex Nup153-like protein.	E3 SUMO-protein ligase RanBP2.	0.998
APZ42_031762	APZ42_014302	A0A164MMU2	A0A0P5TGB9	E3 SUMO-protein ligase RanBP2.	E3 ubiquitin-protein ligase Mdm2.	0.613
APZ42_031762	APZ42_016159	A0A164MMU2	A0A0N8CSS6	E3 SUMO-protein ligase RanBP2.	Spermatogenesis-associated protein 2 protein.	0.782
APZ42_031762	APZ42_020709	A0A164MMU2	A0A164XC36	E3 SUMO-protein ligase RanBP2.	RanBP2-type domain-containing protein.	0.622
APZ42_031762	APZ42_031077	A0A164MMU2	A0A164N5J2	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex Nup153-like protein.	0.998