(24 nodes) Signaling by NOTCH network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_005620	Ubiquitin-40S ribosomal protein S27a. (122 aa)
	APZ42_015091	E3 ubiquitin-protein ligase NEURL1B. (628 aa)
	APZ42_022680	Pre-B-cell leukemia transcription factor. (400 aa)
	APZ42_026609	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe. (378 aa)
	APZ42_027286	Lipopolysaccharide-responsive and beige anchor protein. (2856 aa)
	APZ42_020665	Hairy/enhancer-of-split related with YRPW motif protein. (350 aa)
	APZ42_025063	14-3-3 protein zeta/delta; Belongs to the 14-3-3 family. (247 aa)
	APZ42_005840	Polyubiquitin-B. (124 aa)
	APZ42_013831	Non-specific serine/threonine protein kinase. (532 aa)
	APZ42_011044	Putative Weary. (832 aa)
	APZ42_002843	Putative 6-phosphofructokinase. (102 aa)
	APZ42_033880	O-glucosyltransferase rumi. (407 aa)
	APZ42_031040	Ubiquitin-60S ribosomal protein L40. (128 aa)
	APZ42_029778	Guanylate kinase-associated protein mars. (709 aa)
	APZ42_024844	Uncharacterized protein. (170 aa)
	APZ42_023950	E3 ubiquitin-protein ligase. (872 aa)
	APZ42_022694	ETS ous factor-like protein. (582 aa)
	APZ42_021680	Transmembrane emp24 domain-containing protein eca; Belongs to the EMP24/GP25L family. (634 aa)
	APZ42_021729	Polyubiquitin-B. (611 aa)
	APZ42_020324	Putative Transcription factor HES-2. (590 aa)
	APZ42_016879	E3 ubiquitin-protein ligase mind-bomb. (422 aa)
	APZ42_016875	E3 ubiquitin-protein ligase mind-bomb. (667 aa)
	APZ42_016321	Deltex protein. (238 aa)
	APZ42_019459	Hairy enhancer of split-like 1. (235 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002843	APZ42_011044	A0A164I030	A0A162T5A3	Putative 6-phosphofructokinase.	Putative Weary.	0.514
APZ42_002843	APZ42_013831	A0A164I030	A0A162QGI2	Putative 6-phosphofructokinase.	Non-specific serine/threonine protein kinase.	0.604
APZ42_002843	APZ42_016321	A0A164I030	A0A165ACA1	Putative 6-phosphofructokinase.	Deltex protein.	0.501
APZ42_002843	APZ42_023950	A0A164I030	A0A164UBV9	Putative 6-phosphofructokinase.	E3 ubiquitin-protein ligase.	0.731
APZ42_002843	APZ42_024844	A0A164I030	A0A164TR60	Putative 6-phosphofructokinase.	Uncharacterized protein.	0.514
APZ42_005620	APZ42_005840	A0A164GCP6	A0A162CSN9	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin-B.	0.979
APZ42_005620	APZ42_015091	A0A164GCP6	A0A0P5BF04	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase NEURL1B.	0.679
APZ42_005620	APZ42_016321	A0A164GCP6	A0A165ACA1	Ubiquitin-40S ribosomal protein S27a.	Deltex protein.	0.800
APZ42_005620	APZ42_016875	A0A164GCP6	A0A165A7T5	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase mind-bomb.	0.588
APZ42_005620	APZ42_016879	A0A164GCP6	A0A165A7R7	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase mind-bomb.	0.588
APZ42_005620	APZ42_021729	A0A164GCP6	A0A164WHS6	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin-B.	0.978
APZ42_005620	APZ42_023950	A0A164GCP6	A0A164UBV9	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase.	0.948
APZ42_005620	APZ42_024844	A0A164GCP6	A0A164TR60	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.422
APZ42_005620	APZ42_031040	A0A164GCP6	A0A164N724	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-60S ribosomal protein L40.	0.999
APZ42_005840	APZ42_005620	A0A162CSN9	A0A164GCP6	Polyubiquitin-B.	Ubiquitin-40S ribosomal protein S27a.	0.979
APZ42_005840	APZ42_015091	A0A162CSN9	A0A0P5BF04	Polyubiquitin-B.	E3 ubiquitin-protein ligase NEURL1B.	0.682
APZ42_005840	APZ42_016321	A0A162CSN9	A0A165ACA1	Polyubiquitin-B.	Deltex protein.	0.718
APZ42_005840	APZ42_016875	A0A162CSN9	A0A165A7T5	Polyubiquitin-B.	E3 ubiquitin-protein ligase mind-bomb.	0.494
APZ42_005840	APZ42_016879	A0A162CSN9	A0A165A7R7	Polyubiquitin-B.	E3 ubiquitin-protein ligase mind-bomb.	0.494
APZ42_005840	APZ42_021729	A0A162CSN9	A0A164WHS6	Polyubiquitin-B.	Polyubiquitin-B.	0.900