(57 nodes) COPII-mediated vesicle transport network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_023585	Prolactin regulatory element-binding protein. (417 aa)
	APZ42_028742	General vesicular transport factor p115. (894 aa)
	APZ42_015195	Phospholipase DDHD2. (714 aa)
	APZ42_015622	Serine protease inhibitor serpin; Belongs to the serpin family. (461 aa)
	APZ42_013606	TRK-fused protein. (421 aa)
	APZ42_033020	Alpha-soluble NSF attachment protein. (293 aa)
	EOG090X0GIP	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (213 aa)
	APZ42_023487	Trafficking protein particle complex subunit 10. (1174 aa)
	APZ42_011463	Golgin subfamily A member. (812 aa)
	APZ42_028181	Trafficking protein particle complex subunit 2. (140 aa)
	APZ42_028784	Vesicular integral-membrane protein VIP36. (321 aa)
	APZ42_030563	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)
	APZ42_015163	Cornichon related protein. (156 aa)
	APZ42_032780	Sec1 family domain-containing protein; Belongs to the STXBP/unc-18/SEC1 family. (642 aa)
	APZ42_026537	Cell wall protein DAN4; Belongs to the serpin family. (1045 aa)
	APZ42_011483	Multiple coagulation factor deficiency protein 2. (192 aa)
	APZ42_011577	Lectin, mannose-binding, 1. (521 aa)
	APZ42_034562	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (216 aa)
	EOG090X0HJH	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (142 aa)
	APZ42_018040	Serine/threonine-protein phosphatase. (304 aa)
	APZ42_018567	Multiple coagulation factor deficiency protein 2. (250 aa)
	APZ42_019655	Cornichon protein. (144 aa)
	APZ42_021416	Trafficking protein particle complex subunit 6B. (110 aa)
	APZ42_021533	Transport protein Sec24B protein. (210 aa)
	APZ42_022228	Vesicle-fusing ATPase. (743 aa)
	APZ42_023261	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	APZ42_023900	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (465 aa)
	APZ42_026193	Trafficking protein particle complex subunit 9. (1319 aa)
	APZ42_029101	RabX6. (208 aa)
	APZ42_030707	Putative FK506-binding protein 15. (758 aa)
	APZ42_030798	Serpin B13; Belongs to the serpin family. (785 aa)
	APZ42_032707	EGF repeat and discoidin I domain-containing 3-like protein. (336 aa)
	APZ42_016183	Gamma-soluble NSF attachment protein. (180 aa)
	APZ42_016501	Synaptobrevin YKT6; Belongs to the synaptobrevin family. (201 aa)
	APZ42_032713	EGF repeat and discoidin I domain-containing 3-like protein. (181 aa)
	APZ42_033286	Protein transport protein Sec24C. (1058 aa)
	APZ42_001837	Serine/threonine-protein phosphatase 6 regulatory subunit 3. (437 aa)
	APZ42_011596	Syntaxin-17. (298 aa)
	EOG090X0HBC	EOG090X0HBC; Belongs to the synaptobrevin family. (213 aa)
	APZ42_011545	Protein transport Sec16A-like protein. (2112 aa)
	APZ42_011500	Putative Multiple coagulation factor deficiency protein 2. (78 aa)
	APZ42_011928	Putative Gamma-soluble NSF attachment protein. (106 aa)
	APZ42_012391	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (186 aa)
	APZ42_013186	TBC1 domain family member 20. (406 aa)
	APZ42_013796	Uncharacterized protein. (1206 aa)
	EOG090X07N7	SEC13 protein; Belongs to the WD repeat SEC13 family. (311 aa)
	APZ42_032654	Uncharacterized protein. (97 aa)
	APZ42_019750	Transport Sec24B,-like protein. (400 aa)
	APZ42_034500	Serpin B13; Belongs to the serpin family. (461 aa)
	APZ42_002212	Serine/threonine-protein phosphatase 6 regulatory subunit 3. (206 aa)
	APZ42_012670	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (179 aa)
	APZ42_027629	Golgi reassembly-stacking protein 2. (376 aa)
	APZ42_004973	Ankyrin repeat domain-containing protein 40. (254 aa)
	APZ42_032932	Protein Z-dependent protease inhibitor; Belongs to the serpin family. (446 aa)
	APZ42_018667	Syntaxin-5; Belongs to the syntaxin family. (423 aa)
	APZ42_019396	Transport protein Sec31A. (1244 aa)
	APZ42_013694	t-SNARE domain-containing protein; Belongs to the syntaxin family. (278 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001837	APZ42_018040	A0A164IPW0	A0A164ZI70	Serine/threonine-protein phosphatase 6 regulatory subunit 3.	Serine/threonine-protein phosphatase.	0.965
APZ42_001837	APZ42_032654	A0A164IPW0	A0A162D8T6	Serine/threonine-protein phosphatase 6 regulatory subunit 3.	Uncharacterized protein.	0.487
APZ42_001837	APZ42_033286	A0A164IPW0	A0A164L8C2	Serine/threonine-protein phosphatase 6 regulatory subunit 3.	Protein transport protein Sec24C.	0.605
APZ42_002212	APZ42_018040	A0A162C5Q5	A0A164ZI70	Serine/threonine-protein phosphatase 6 regulatory subunit 3.	Serine/threonine-protein phosphatase.	0.965
APZ42_002212	APZ42_033286	A0A162C5Q5	A0A164L8C2	Serine/threonine-protein phosphatase 6 regulatory subunit 3.	Protein transport protein Sec24C.	0.605
APZ42_004973	APZ42_011483	A0A0P6ET81	A0A0P5TBH1	Ankyrin repeat domain-containing protein 40.	Multiple coagulation factor deficiency protein 2.	0.556
APZ42_004973	APZ42_011500	A0A0P6ET81	A0A162SPI3	Ankyrin repeat domain-containing protein 40.	Putative Multiple coagulation factor deficiency protein 2.	0.556
APZ42_004973	APZ42_011545	A0A0P6ET81	A0A162SSN7	Ankyrin repeat domain-containing protein 40.	Protein transport Sec16A-like protein.	0.928
APZ42_004973	APZ42_011577	A0A0P6ET81	A0A0P5TKR5	Ankyrin repeat domain-containing protein 40.	Lectin, mannose-binding, 1.	0.776
APZ42_004973	APZ42_011596	A0A0P6ET81	A0A162STE0	Ankyrin repeat domain-containing protein 40.	Syntaxin-17.	0.518
APZ42_004973	APZ42_012391	A0A0P6ET81	A0A162RRA7	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.642
APZ42_004973	APZ42_012670	A0A0P6ET81	A0A0P6H0X2	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.805
APZ42_004973	APZ42_013694	A0A0P6ET81	A0A0P5Z5J9	Ankyrin repeat domain-containing protein 40.	t-SNARE domain-containing protein; Belongs to the syntaxin family.	0.518
APZ42_004973	APZ42_013796	A0A0P6ET81	A0A162QFE9	Ankyrin repeat domain-containing protein 40.	Uncharacterized protein.	0.921
APZ42_004973	APZ42_015163	A0A0P6ET81	A0A0P5FFJ2	Ankyrin repeat domain-containing protein 40.	Cornichon related protein.	0.630
APZ42_004973	APZ42_015195	A0A0P6ET81	A0A0P5YSY4	Ankyrin repeat domain-containing protein 40.	Phospholipase DDHD2.	0.775
APZ42_004973	APZ42_018567	A0A0P6ET81	A0A164Z0R4	Ankyrin repeat domain-containing protein 40.	Multiple coagulation factor deficiency protein 2.	0.556
APZ42_004973	APZ42_018667	A0A0P6ET81	A0A0P6A860	Ankyrin repeat domain-containing protein 40.	Syntaxin-5; Belongs to the syntaxin family.	0.768
APZ42_004973	APZ42_019655	A0A0P6ET81	A0A164YC13	Ankyrin repeat domain-containing protein 40.	Cornichon protein.	0.630
APZ42_004973	APZ42_019750	A0A0P6ET81	A0A162CM36	Ankyrin repeat domain-containing protein 40.	Transport Sec24B,-like protein.	0.921