STRINGSTRING
APZ42_016915 APZ42_016915 APZ42_018583 APZ42_018583 APZ42_018987 APZ42_018987 APZ42_025680 APZ42_025680 APZ42_025991 APZ42_025991 LSM5 LSM5 APZ42_026487 APZ42_026487 APZ42_026680 APZ42_026680 APZ42_027248 APZ42_027248 APZ42_029902 APZ42_029902 APZ42_032151 APZ42_032151 EOG090X09A7 EOG090X09A7 APZ42_034172 APZ42_034172 APZ42_034476 APZ42_034476 APZ42_000421 APZ42_000421 APZ42_003890 APZ42_003890 APZ42_005047 APZ42_005047 APZ42_005050 APZ42_005050 LSM1 LSM1 APZ42_012115 APZ42_012115 APZ42_012842 APZ42_012842 LSM3 LSM3 APZ42_013719 APZ42_013719 APZ42_013906 APZ42_013906 APZ42_015168 APZ42_015168 EOG090X0CWA EOG090X0CWA APZ42_015620 APZ42_015620 APZ42_016013 APZ42_016013 APZ42_024544 APZ42_024544 APZ42_030268 APZ42_030268 APZ42_028638 APZ42_028638 APZ42_013175 APZ42_013175 APZ42_018002 APZ42_018002 LSM4 LSM4 APZ42_017394 APZ42_017394 APZ42_023529 APZ42_023529 APZ42_013675 APZ42_013675 APZ42_023758 APZ42_023758 APZ42_016064 APZ42_016064 APZ42_012906 APZ42_012906 EOG090X0KYU EOG090X0KYU APZ42_025305 APZ42_025305 APZ42_024658 APZ42_024658 APZ42_023688 APZ42_023688 APZ42_022994 APZ42_022994 APZ42_021901 APZ42_021901 APZ42_020416 APZ42_020416 APZ42_020215 APZ42_020215 EOG090X07B6 EOG090X07B6 EOG090X09DD EOG090X09DD APZ42_023314 APZ42_023314 APZ42_023764 APZ42_023764 PAN3 PAN3 APZ42_025064 APZ42_025064 APZ42_030617 APZ42_030617 APZ42_020930 APZ42_020930 APZ42_032645 APZ42_032645 APZ42_017009 APZ42_017009 APZ42_017820 APZ42_017820
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_016915Tetratricopeptide repeat protein 37. (1337 aa)
APZ42_018583Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. (352 aa)
APZ42_018987Polyadenylate-binding protein-interacting protein. (423 aa)
APZ42_025680Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family. (958 aa)
APZ42_025991PAT1 1 protein. (724 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
APZ42_026487Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (621 aa)
APZ42_026680ATP-dependent RNA Helicase me31b; Belongs to the DEAD box helicase family. (303 aa)
APZ42_027248Helicase SKI2W. (1240 aa)
APZ42_029902WD repeat-containing protein 61. (369 aa)
APZ42_032151Poly(A) RNA polymerase, mitochondrial. (645 aa)
EOG090X09A7Cell differentiation protein RCD1. (299 aa)
APZ42_034172Putative Poly-specific ribonuclease PARN. (577 aa)
APZ42_034476Putative Dis3; Belongs to the RNR ribonuclease family. (1310 aa)
APZ42_000421Putative ATP-dependent RNA Helicase me31b. (74 aa)
APZ42_003890ATP-dependent RNA Helicase me31b. (92 aa)
APZ42_005047ATP-dependent RNA Helicase me31b. (121 aa)
APZ42_005050Putative ATP-dependent RNA Helicase me31b. (158 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (137 aa)
APZ42_012115DIS3 exonuclease 2-like protein. (154 aa)
APZ42_012842CCHC-type domain-containing protein. (1377 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
APZ42_013719Uncharacterized protein. (44 aa)
APZ42_013906PAB-dependent poly(A)-specific ribonuclease subunit PAN2. (1060 aa)
APZ42_015168Exosome complex exonuclease rrp46. (218 aa)
EOG090X0CWAExosome complex component RRP42. (290 aa)
APZ42_015620Poly(A) RNA polymerase, mitochondrial. (726 aa)
APZ42_016013Uncharacterized protein. (559 aa)
APZ42_024544Putative CCR4-NOT transcription complex subunit. (733 aa)
APZ42_030268Exosome complex component RRP43. (276 aa)
APZ42_028638U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
APZ42_013175Enhancer of mRNA-decapping protein 4. (1123 aa)
APZ42_018002CCR4-NOT transcription complex subunit. (475 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
APZ42_017394Putative Poly RNA polymerase gld-2 A. (582 aa)
APZ42_023529Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
APZ42_013675Putative UPF0692 protein. (279 aa)
APZ42_023758CCR4-NOT transcription complex subunit. (459 aa)
APZ42_016064Exosome complex exonuclease MTR3. (288 aa)
APZ42_012906ATP-dependent RNA Helicase me31b; Belongs to the DEAD box helicase family. (450 aa)
EOG090X0KYUU6 snRNA-associated Sm LSm7-like protein. (115 aa)
APZ42_025305HBS1-like protein. (691 aa)
APZ42_024658mRNA-decapping enzyme 2. (365 aa)
APZ42_023688Putative Target of EGR1 protein 1. (421 aa)
APZ42_022994Exosome complex component RRP40. (242 aa)
APZ42_021901CCR4-NOT transcription complex subunit 6. (461 aa)
APZ42_020416CCR4-NOT transcription complex subunit 10. (688 aa)
APZ42_020215Putative Eukaryotic translation initiation factor 4B. (658 aa)
EOG090X07B6mRNA-decapping enzyme 1B. (405 aa)
EOG090X09DDExosome complex component RRP4. (292 aa)
APZ42_023314Exosome complex exonuclease RRP41. (246 aa)
APZ42_023764Exosome complex component CSL4. (212 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (674 aa)
APZ42_025064CCR4-NOT transcription complex subunit. (2481 aa)
APZ42_030617CCR4-NOT transcription complex subunit. (1010 aa)
APZ42_0209305'-nucleotidase; Belongs to the pyrimidine 5'-nucleotidase family. (348 aa)
APZ42_032645Exosome complex component RRP43. (389 aa)
APZ42_017009Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (404 aa)
APZ42_017820U6 snRNA-associated Sm protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (79 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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