STRINGSTRING
APZ42_013906 APZ42_013906 APZ42_015620 APZ42_015620 APZ42_016013 APZ42_016013 APZ42_024544 APZ42_024544 APZ42_018002 APZ42_018002 APZ42_017009 APZ42_017009 APZ42_018583 APZ42_018583 APZ42_018987 APZ42_018987 APZ42_020215 APZ42_020215 APZ42_023529 APZ42_023529 APZ42_023758 APZ42_023758 PAN3 PAN3 APZ42_025064 APZ42_025064 APZ42_030617 APZ42_030617 APZ42_020416 APZ42_020416 APZ42_021901 APZ42_021901 APZ42_026487 APZ42_026487 EOG090X09A7 EOG090X09A7 APZ42_034172 APZ42_034172 APZ42_012842 APZ42_012842
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_013906PAB-dependent poly(A)-specific ribonuclease subunit PAN2. (1060 aa)
APZ42_015620Poly(A) RNA polymerase, mitochondrial. (726 aa)
APZ42_016013Uncharacterized protein. (559 aa)
APZ42_024544Putative CCR4-NOT transcription complex subunit. (733 aa)
APZ42_018002CCR4-NOT transcription complex subunit. (475 aa)
APZ42_017009Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (404 aa)
APZ42_018583Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family. (352 aa)
APZ42_018987Polyadenylate-binding protein-interacting protein. (423 aa)
APZ42_020215Putative Eukaryotic translation initiation factor 4B. (658 aa)
APZ42_023529Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
APZ42_023758CCR4-NOT transcription complex subunit. (459 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (674 aa)
APZ42_025064CCR4-NOT transcription complex subunit. (2481 aa)
APZ42_030617CCR4-NOT transcription complex subunit. (1010 aa)
APZ42_020416CCR4-NOT transcription complex subunit 10. (688 aa)
APZ42_021901CCR4-NOT transcription complex subunit 6. (461 aa)
APZ42_026487Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (621 aa)
EOG090X09A7Cell differentiation protein RCD1. (299 aa)
APZ42_034172Putative Poly-specific ribonuclease PARN. (577 aa)
APZ42_012842CCHC-type domain-containing protein. (1377 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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