(50 nodes) Golgi Associated Vesicle Biogenesis network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_018614	Uncharacterized protein. (1649 aa)
	APZ42_024667	Phosrestin i arrestin b arrestin. (395 aa)
	APZ42_034547	ADP ribosylation factor protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	APZ42_015148	Carboxypeptidase M. (481 aa)
	APZ42_031704	AP-3 complex subunit sigma-2. (189 aa)
	APZ42_012417	Putative Carboxypeptidase X1. (446 aa)
	APZ42_027259	Golgi resident protein GCP60. (443 aa)
	APZ42_018234	Metastasis suppressor protein. (916 aa)
	APZ42_024201	AP-1 complex subunit gamma. (912 aa)
	APZ42_017011	Sorting nexin-2. (527 aa)
	APZ42_029558	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	APZ42_012020	Beta-arrestin-1. (395 aa)
	APZ42_017601	Carboxypeptidase D. (1351 aa)
	APZ42_025167	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis. (134 aa)
	APZ42_020788	AP complex subunit beta. (927 aa)
	APZ42_020867	Sorting nexin; Belongs to the sorting nexin family. (540 aa)
	APZ42_022452	Src substrate cortactin. (533 aa)
	APZ42_001154	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta; Belongs to the PI3/PI4-kinase family. (139 aa)
	APZ42_020216	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (228 aa)
	APZ42_018911	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1663 aa)
	APZ42_016272	Putative Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (523 aa)
	APZ42_010847	Endophilin-A. (389 aa)
	APZ42_029329	Putative Huntingtin interacting protein 1. (1369 aa)
	APZ42_026018	Vesicle-associated membrane protein 7. (133 aa)
	APZ42_015724	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1060 aa)
	APZ42_014948	Putative Pumilio. (1214 aa)
	APZ42_014199	Putative Carboxypeptidase M. (586 aa)
	APZ42_013654	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	APZ42_012929	Vesicle-associated membrane protein 8. (122 aa)
	APZ42_008838	Putative Sorting nexin-6. (85 aa)
	APZ42_003320	Putative Huntingtin-interacting protein 1. (187 aa)
	APZ42_002399	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (349 aa)
	APZ42_001149	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta. (194 aa)
	APZ42_028960	Cyclin-G-associated kinase. (824 aa)
	APZ42_028682	Inositol polyphosphate 5-phosphatase OCRL-1. (788 aa)
	APZ42_028209	Putative Progesterone-induced-blocking factor 1/sw. (547 aa)
	APZ42_028262	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (95 aa)
	APZ42_027137	Beta-arrestin-1. (423 aa)
	APZ42_017621	Phosrestin ii arrestin a arrestin-like protein. (441 aa)
	APZ42_027421	Putative Tumor protein D54. (225 aa)
	APZ42_026664	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta; Belongs to the PI3/PI4-kinase family. (1689 aa)
	APZ42_024455	Carboxypeptidase M. (756 aa)
	APZ42_022618	Sorting nexin; Involved in several stages of intracellular trafficking. (408 aa)
	APZ42_022686	Dynamin. (531 aa)
	APZ42_021891	Beta-arrestin-2. (844 aa)
	APZ42_021745	Protein TBRG4. (602 aa)
	APZ42_021392	NECAP-like protein. (276 aa)
	APZ42_020749	ADP-ribosylation factor 5-like protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	APZ42_019956	Cappuccino protein. (160 aa)
	APZ42_019116	Phosphatidylinositol-binding clathrin assembly protein. (431 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001149	APZ42_002399	A0A164J581	A0A164IAD9	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.568
APZ42_001149	APZ42_008838	A0A164J581	A0A164EDW6	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Putative Sorting nexin-6.	0.604
APZ42_001149	APZ42_012020	A0A164J581	A0A0P5Y6Q9	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Beta-arrestin-1.	0.495
APZ42_001149	APZ42_013654	A0A164J581	A0A162QPP9	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.584
APZ42_001149	APZ42_016272	A0A164J581	A0A165AIH9	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Putative Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.554
APZ42_001149	APZ42_017011	A0A164J581	A0A0P5ME33	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Sorting nexin-2.	0.653
APZ42_001149	APZ42_017621	A0A164J581	A0A164ZZ12	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Phosrestin ii arrestin a arrestin-like protein.	0.495
APZ42_001149	APZ42_018911	A0A164J581	A0A162CQ61	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.692
APZ42_001149	APZ42_019116	A0A164J581	A0A164YKC7	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Phosphatidylinositol-binding clathrin assembly protein.	0.714
APZ42_001149	APZ42_020216	A0A164J581	A0A162CEI2	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.700
APZ42_001149	APZ42_020788	A0A164J581	A0A0P6DXK2	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	AP complex subunit beta.	0.627
APZ42_001149	APZ42_020867	A0A164J581	A0A0P6E5K5	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Sorting nexin; Belongs to the sorting nexin family.	0.693
APZ42_001149	APZ42_021745	A0A164J581	A0A164WHT6	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Protein TBRG4.	0.584
APZ42_001149	APZ42_021891	A0A164J581	A0A164W942	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Beta-arrestin-2.	0.495
APZ42_001149	APZ42_022618	A0A164J581	A0A164VN48	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.604
APZ42_001149	APZ42_022686	A0A164J581	A0A164VQ54	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Dynamin.	0.554
APZ42_001149	APZ42_024667	A0A164J581	A0A0N8CB51	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Phosrestin i arrestin b arrestin.	0.495
APZ42_001149	APZ42_027137	A0A164J581	A0A164RB02	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Beta-arrestin-1.	0.495
APZ42_001149	APZ42_028262	A0A164J581	A0A164QM97	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.568
APZ42_001149	APZ42_028682	A0A164J581	A0A164QBN1	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta.	Inositol polyphosphate 5-phosphatase OCRL-1.	0.681