STRINGSTRING
APZ42_029427 APZ42_029427 APZ42_028255 APZ42_028255 APZ42_028353 APZ42_028353 APZ42_027674 APZ42_027674 APZ42_026818 APZ42_026818 APZ42_026689 APZ42_026689 APZ42_024009 APZ42_024009 APZ42_024207 APZ42_024207 APZ42_023368 APZ42_023368 APZ42_022083 APZ42_022083 APZ42_021155 APZ42_021155 APZ42_021138 APZ42_021138 APZ42_021147 APZ42_021147 APZ42_020719 APZ42_020719 APZ42_019925 APZ42_019925 APZ42_020217 APZ42_020217 APZ42_019440 APZ42_019440 APZ42_019453 APZ42_019453 APZ42_019320 APZ42_019320 APZ42_018622 APZ42_018622 APZ42_018498 APZ42_018498 APZ42_018043 APZ42_018043 APZ42_017810 APZ42_017810 APZ42_017703 APZ42_017703 APZ42_017597 APZ42_017597 APZ42_016542 APZ42_016542 APZ42_016228 APZ42_016228 APZ42_014821 APZ42_014821 APZ42_021806 APZ42_021806 APZ42_012190 APZ42_012190 APZ42_017655 APZ42_017655 APZ42_016450 APZ42_016450 APZ42_014754 APZ42_014754 APZ42_017207 APZ42_017207 APZ42_017057 APZ42_017057 APZ42_027379 APZ42_027379 EOG090X0PCK EOG090X0PCK APZ42_011579 APZ42_011579 EOG090X02QS EOG090X02QS EOG090X0BPM EOG090X0BPM APZ42_026494 APZ42_026494 EOG090X0NWO EOG090X0NWO APZ42_022245 APZ42_022245 APZ42_014504 APZ42_014504 APZ42_030962 APZ42_030962 APZ42_014299 APZ42_014299 APZ42_026392 APZ42_026392 APZ42_032789 APZ42_032789 APZ42_027296 APZ42_027296 APZ42_018611 APZ42_018611 APZ42_012093 APZ42_012093 APZ42_011724 APZ42_011724 APZ42_028327 APZ42_028327 EOG090X0F8Z EOG090X0F8Z APZ42_017061 APZ42_017061 APZ42_011824 APZ42_011824 APZ42_011517 APZ42_011517 APZ42_011543 APZ42_011543 APZ42_022464 APZ42_022464 APZ42_002383 APZ42_002383 APZ42_002941 APZ42_002941 APZ42_032266 APZ42_032266 APZ42_004441 APZ42_004441 APZ42_015656 APZ42_015656 EOG090X080D EOG090X080D APZ42_015050 APZ42_015050 APZ42_015388 APZ42_015388 APZ42_014775 APZ42_014775 APZ42_013593 APZ42_013593 APZ42_013642 APZ42_013642 APZ42_013507 APZ42_013507 EOG090X0JP1 EOG090X0JP1 APZ42_012562 APZ42_012562 APZ42_012032 APZ42_012032 APZ42_011202 APZ42_011202 APZ42_010900 APZ42_010900 APZ42_005758 APZ42_005758 APZ42_005682 APZ42_005682 APZ42_005470 APZ42_005470 APZ42_003221 APZ42_003221 APZ42_002910 APZ42_002910 APZ42_034382 APZ42_034382 APZ42_034474 APZ42_034474 EOG090X0J86 EOG090X0J86 APZ42_030367 APZ42_030367 APZ42_029902 APZ42_029902 APZ42_029692 APZ42_029692 APZ42_029355 APZ42_029355 EOG090X0HZC EOG090X0HZC EOG090X09KD EOG090X09KD APZ42_010999 APZ42_010999 APZ42_019580 APZ42_019580
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_029427Transcription elongation factor SPT5. (1048 aa)
APZ42_028255DNA-directed RNA polymerases I. (265 aa)
APZ42_028353Negative elongation factor A. (544 aa)
APZ42_027674Transcription elongation factor S-II. (260 aa)
APZ42_026818General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (465 aa)
APZ42_026689General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (197 aa)
APZ42_024009Putative Transcription initiation factor TFIID subunit 2. (1846 aa)
APZ42_024207Transcription initiation factor TFIID subunit 5. (678 aa)
APZ42_023368RNA polymerase II elongation factor ELL-like protein. (501 aa)
APZ42_022083Putative RNA polymerase II elongation factor ELL. (77 aa)
APZ42_021155Uncharacterized protein. (361 aa)
APZ42_021138General transcription factor IIH subunit 1. (567 aa)
APZ42_021147Putative Transcription initiation factor TFIID subunit 11. (261 aa)
APZ42_020719AHD domain-containing protein. (838 aa)
APZ42_019925TATA box binding protein tbp-associated factor. (142 aa)
APZ42_020217Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (151 aa)
APZ42_019440Transcription elongation factor B Polypeptide 3. (514 aa)
APZ42_019453Putative WD repeat-containing protein 3. (566 aa)
APZ42_019320Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (546 aa)
APZ42_018622Negative elongation factor B. (531 aa)
APZ42_018498RNA polymerase-associated protein Rtf1. (203 aa)
APZ42_018043Putative RNA polymerase-associated protein Rtf1. (520 aa)
APZ42_017810Putative Cyclin-L1; Belongs to the cyclin family. (971 aa)
APZ42_017703DNA-directed RNA polymerase; Belongs to the RNA polymerase beta chain family. (775 aa)
APZ42_017597DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1454 aa)
APZ42_016542Transcription initiation factor TFIID subunit 1. (1826 aa)
APZ42_016228AF4/FMR2 family member 4. (888 aa)
APZ42_014821Protein IWS1. (586 aa)
APZ42_021806RNA polymerase II-associated factor 1. (510 aa)
APZ42_012190Putative Another transcription unit protein. (588 aa)
APZ42_017655DNA-directed RNA polymerases I, II, and III subunit RPABC2. (129 aa)
APZ42_016450Putative Transcription initiation factor TFIID subunit 4. (997 aa)
APZ42_014754Transcription initiation factor IIa subunit 1. (325 aa)
APZ42_017207Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (280 aa)
APZ42_017057DUF2236 domain-containing protein. (429 aa)
APZ42_027379Transcription initiation factor TFIID subunit 6. (601 aa)
EOG090X0PCKDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
APZ42_011579Nuclear cap-binding protein subunit 1. (809 aa)
EOG090X02QSNegative elongation factor C/D. (584 aa)
EOG090X0BPMCDK-activating kinase assembly factor MAT1. (344 aa)
APZ42_026494DNA-directed RNA polymerases I, II, and III subunit RPABC4. (59 aa)
EOG090X0NWOTranscription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
APZ42_022245Transcription elongation factor A N-terminal and central domain-containing protein 2. (210 aa)
APZ42_014504Transcription initiation factor TFIID subunit 9. (229 aa)
APZ42_030962Cyclin-related protein FAM58A; Belongs to the cyclin family. (266 aa)
APZ42_014299General transcription factor IIH subunit. (427 aa)
APZ42_026392TATA-box-binding protein. (311 aa)
APZ42_032789Transcription initiation factor iib general transcription factor tfiib. (308 aa)
APZ42_027296Transcription initiation factor TFIID subunit 7. (376 aa)
APZ42_018611TFIIH basal transcription factor complex helicase XPD subunit. (760 aa)
APZ42_012093DNA-directed RNA polymerase II subunit RPB3. (274 aa)
APZ42_011724Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (384 aa)
APZ42_028327Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (379 aa)
EOG090X0F8ZNegative elongation factor E. (290 aa)
APZ42_017061DNA-directed RNA polymerase II subunit RPB7. (172 aa)
APZ42_011824Uncharacterized protein. (153 aa)
APZ42_011517Parafibromin. (556 aa)
APZ42_011543FACT complex subunit SPT16. (1084 aa)
APZ42_022464DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
APZ42_002383Putative DNA-directed RNA polymerase subunit beta. (107 aa)
APZ42_002941RNA polymerase II elongation factor ELL. (83 aa)
APZ42_032266Transcription initiation factor IIA subunit 2. (159 aa)
APZ42_004441DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (133 aa)
APZ42_015656Putative Transcription initiation factor TFIID subunit 3. (928 aa)
EOG090X080DEOG090X080D; Belongs to the cyclin family. (328 aa)
APZ42_015050Cyclin-dependent kinase 2-interacting protein. (201 aa)
APZ42_015388TFIIH basal transcription factor complex helicase XPB subunit. (797 aa)
APZ42_014775TATA box binding protein-related factor. (236 aa)
APZ42_013593FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (568 aa)
APZ42_013642Uncharacterized protein. (538 aa)
APZ42_013507Uncharacterized protein. (434 aa)
EOG090X0JP1Transcription elongation factor B polypeptide 2. (120 aa)
APZ42_012562Uncharacterized protein. (287 aa)
APZ42_012032Putative Transcription elongation factor SPT6. (2295 aa)
APZ42_011202Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (280 aa)
APZ42_010900RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (820 aa)
APZ42_005758DNA-directed RNA polymerase subunit beta. (86 aa)
APZ42_005682Putative DNA-directed RNA polymerase subunit beta. (88 aa)
APZ42_005470Putative DNA-directed RNA polymerase subunit beta. (120 aa)
APZ42_003221Putative DNA-directed RNA polymerase subunit beta. (107 aa)
APZ42_002910Putative TATA box binding protein-related factor. (97 aa)
APZ42_034382Transcription initiation factor IIB. (319 aa)
APZ42_034474RNA polymerase-associated protein CTR9. (1181 aa)
EOG090X0J86DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)
APZ42_030367DNA-directed RNA polymerase. (436 aa)
APZ42_029902WD repeat-containing protein 61. (369 aa)
APZ42_029692General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (268 aa)
APZ42_029355DNA-directed RNA polymerase. (379 aa)
EOG090X0HZCTranscription initiation factor TFIID subunit 12. (136 aa)
EOG090X09KDCyclin K-like protein; Belongs to the cyclin family. (407 aa)
APZ42_010999General transcription factor IIE subunit 1. (422 aa)
APZ42_019580Transcription elongation factor B Polypeptide 1; Belongs to the SKP1 family. (114 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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