STRINGSTRING
APZ42_026689 APZ42_026689 APZ42_006478 APZ42_006478 APZ42_013465 APZ42_013465 APZ42_013642 APZ42_013642 APZ42_015388 APZ42_015388 APZ42_015268 APZ42_015268 EOG090X080D EOG090X080D APZ42_004441 APZ42_004441 APZ42_002383 APZ42_002383 APZ42_022464 APZ42_022464 APZ42_011824 APZ42_011824 APZ42_017597 APZ42_017597 APZ42_017703 APZ42_017703 APZ42_019320 APZ42_019320 APZ42_017061 APZ42_017061 APZ42_028327 APZ42_028327 APZ42_012093 APZ42_012093 APZ42_018611 APZ42_018611 APZ42_014299 APZ42_014299 APZ42_017740 APZ42_017740 EOG090X0BPM EOG090X0BPM APZ42_011579 APZ42_011579 EOG090X0PCK EOG090X0PCK APZ42_018144 APZ42_018144 APZ42_017057 APZ42_017057 APZ42_017655 APZ42_017655 APZ42_005758 APZ42_005758 APZ42_020217 APZ42_020217 APZ42_021138 APZ42_021138 APZ42_021155 APZ42_021155 APZ42_023597 APZ42_023597 EOG090X07I2 EOG090X07I2 APZ42_005682 APZ42_005682 APZ42_005470 APZ42_005470 APZ42_005193 APZ42_005193 APZ42_003221 APZ42_003221 EOG090X0J86 EOG090X0J86 APZ42_031837 APZ42_031837 APZ42_030367 APZ42_030367 APZ42_029692 APZ42_029692 APZ42_029355 APZ42_029355 APZ42_029427 APZ42_029427 APZ42_028255 APZ42_028255 APZ42_026818 APZ42_026818 APZ42_026494 APZ42_026494
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_026689General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (197 aa)
APZ42_006478mRNA_cap_C domain-containing protein. (194 aa)
APZ42_013465mRNA_cap_enzyme domain-containing protein. (349 aa)
APZ42_013642Uncharacterized protein. (538 aa)
APZ42_015388TFIIH basal transcription factor complex helicase XPB subunit. (797 aa)
APZ42_015268TYR_PHOSPHATASE_2 domain-containing protein. (364 aa)
EOG090X080DEOG090X080D; Belongs to the cyclin family. (328 aa)
APZ42_004441DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (133 aa)
APZ42_002383Putative DNA-directed RNA polymerase subunit beta. (107 aa)
APZ42_022464DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
APZ42_011824Uncharacterized protein. (153 aa)
APZ42_017597DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1454 aa)
APZ42_017703DNA-directed RNA polymerase; Belongs to the RNA polymerase beta chain family. (775 aa)
APZ42_019320Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (546 aa)
APZ42_017061DNA-directed RNA polymerase II subunit RPB7. (172 aa)
APZ42_028327Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (379 aa)
APZ42_012093DNA-directed RNA polymerase II subunit RPB3. (274 aa)
APZ42_018611TFIIH basal transcription factor complex helicase XPD subunit. (760 aa)
APZ42_014299General transcription factor IIH subunit. (427 aa)
APZ42_017740Sperm-associated antigen 7. (214 aa)
EOG090X0BPMCDK-activating kinase assembly factor MAT1. (344 aa)
APZ42_011579Nuclear cap-binding protein subunit 1. (809 aa)
EOG090X0PCKDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
APZ42_018144Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (608 aa)
APZ42_017057DUF2236 domain-containing protein. (429 aa)
APZ42_017655DNA-directed RNA polymerases I, II, and III subunit RPABC2. (129 aa)
APZ42_005758DNA-directed RNA polymerase subunit beta. (86 aa)
APZ42_020217Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (151 aa)
APZ42_021138General transcription factor IIH subunit 1. (567 aa)
APZ42_021155Uncharacterized protein. (361 aa)
APZ42_023597Putative mRNA CAP guanine-N7 methyltransferase. (121 aa)
EOG090X07I2mRNA cap guanine-N7 methyltransferase. (431 aa)
APZ42_005682Putative DNA-directed RNA polymerase subunit beta. (88 aa)
APZ42_005470Putative DNA-directed RNA polymerase subunit beta. (120 aa)
APZ42_005193mRNA_cap_C domain-containing protein. (192 aa)
APZ42_003221Putative DNA-directed RNA polymerase subunit beta. (107 aa)
EOG090X0J86DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)
APZ42_031837mRNA_cap_enzyme domain-containing protein. (195 aa)
APZ42_030367DNA-directed RNA polymerase. (436 aa)
APZ42_029692General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (268 aa)
APZ42_029355DNA-directed RNA polymerase. (379 aa)
APZ42_029427Transcription elongation factor SPT5. (1048 aa)
APZ42_028255DNA-directed RNA polymerases I. (265 aa)
APZ42_026818General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (465 aa)
APZ42_026494DNA-directed RNA polymerases I, II, and III subunit RPABC4. (59 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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