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APZ42_021138 APZ42_021138 EOG090X0464 EOG090X0464 APZ42_023872 APZ42_023872 APZ42_023887 APZ42_023887 APZ42_025175 APZ42_025175 APZ42_026494 APZ42_026494 APZ42_026689 APZ42_026689 APZ42_026818 APZ42_026818 APZ42_027562 APZ42_027562 APZ42_028255 APZ42_028255 APZ42_002910 APZ42_002910 APZ42_011260 APZ42_011260 APZ42_013205 APZ42_013205 APZ42_014775 APZ42_014775 APZ42_015388 APZ42_015388 EOG090X080D EOG090X080D APZ42_014918 APZ42_014918 APZ42_001774 APZ42_001774 APZ42_004607 APZ42_004607 EOG090X0LKA EOG090X0LKA APZ42_022464 APZ42_022464 APZ42_028327 APZ42_028327 APZ42_019866 APZ42_019866 APZ42_018611 APZ42_018611 APZ42_026392 APZ42_026392 APZ42_014299 APZ42_014299 APZ42_031489 APZ42_031489 EOG090X0BPM EOG090X0BPM APZ42_013604 APZ42_013604 EOG090X0PCK EOG090X0PCK APZ42_021252 APZ42_021252 APZ42_017655 APZ42_017655
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_021138General transcription factor IIH subunit 1. (567 aa)
EOG090X0464Acidic repeat-containing-like protein. (604 aa)
APZ42_023872Uncharacterized protein. (791 aa)
APZ42_023887Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (146 aa)
APZ42_025175Putative Transcription factor A, mitochondrial. (618 aa)
APZ42_026494DNA-directed RNA polymerases I, II, and III subunit RPABC4. (59 aa)
APZ42_026689General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (197 aa)
APZ42_026818General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (465 aa)
APZ42_027562DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2202 aa)
APZ42_028255DNA-directed RNA polymerases I. (265 aa)
APZ42_002910Putative TATA box binding protein-related factor. (97 aa)
APZ42_011260Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (381 aa)
APZ42_013205DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1076 aa)
APZ42_014775TATA box binding protein-related factor. (236 aa)
APZ42_015388TFIIH basal transcription factor complex helicase XPB subunit. (797 aa)
EOG090X080DEOG090X080D; Belongs to the cyclin family. (328 aa)
APZ42_014918DNA-directed RNA polymerases I and III subunit RPAC1. (353 aa)
APZ42_001774Uncharacterized protein. (97 aa)
APZ42_004607Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
EOG090X0LKADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
APZ42_022464DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
APZ42_028327Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (379 aa)
APZ42_019866RNA polymerase I-specific transcription initiation factor RRN3. (539 aa)
APZ42_018611TFIIH basal transcription factor complex helicase XPD subunit. (760 aa)
APZ42_026392TATA-box-binding protein. (311 aa)
APZ42_014299General transcription factor IIH subunit. (427 aa)
APZ42_031489Putative DNA-directed RNA polymerase I subunit RPA49. (408 aa)
EOG090X0BPMCDK-activating kinase assembly factor MAT1. (344 aa)
APZ42_013604DNA-directed RNA polymerase I subunit RPA43. (684 aa)
EOG090X0PCKDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
APZ42_021252Uncharacterized protein. (397 aa)
APZ42_017655DNA-directed RNA polymerases I, II, and III subunit RPABC2. (129 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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