(13 nodes) TCP-1/cpn60 chaperonin family network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EOG090X03U0	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (540 aa)
	APZ42_027162	1-phosphatidylinositol 3-phosphate 5-kinase. (1907 aa)
	APZ42_020734	T-complex protein 1 subunit epsilon. (540 aa)
	EOG090X033I	T-complex protein 1 subunit alpha. (555 aa)
	APZ42_034295	60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family. (576 aa)
	APZ42_019565	T-complex protein 1 subunit zeta. (530 aa)
	APZ42_008093	T-complex protein 1 subunit theta. (76 aa)
	APZ42_005070	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family. (136 aa)
	APZ42_012974	Putative T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family. (163 aa)
	APZ42_012835	T-complex protein 1 subunit beta. (534 aa)
	APZ42_011412	T-complex protein 1 subunit gamma. (547 aa)
	APZ42_008562	T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family. (355 aa)
	APZ42_018443	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family. (299 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_005070	APZ42_008093	A0A162EZD3	A0A162BTC2	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit theta.	0.969
APZ42_005070	APZ42_008562	A0A162EZD3	A0A164EJX8	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family.	0.969
APZ42_005070	APZ42_011412	A0A162EZD3	A0A162SNX3	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit gamma.	0.977
APZ42_005070	APZ42_012835	A0A162EZD3	A0A162RG33	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit beta.	0.998
APZ42_005070	APZ42_012974	A0A162EZD3	A0A162RAT0	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	Putative T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family.	0.969
APZ42_005070	APZ42_018443	A0A162EZD3	A0A164Z3K5	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	0.930
APZ42_005070	APZ42_019565	A0A162EZD3	A0A0P5ZK33	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit zeta.	0.996
APZ42_005070	APZ42_020734	A0A162EZD3	A0A0N8CEK0	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit epsilon.	0.998
APZ42_005070	EOG090X033I	A0A162EZD3	A0A0P5W1F5	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit alpha.	0.998
APZ42_005070	EOG090X03U0	A0A162EZD3	A0A164VFC7	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.997
APZ42_008093	APZ42_005070	A0A162BTC2	A0A162EZD3	T-complex protein 1 subunit theta.	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	0.969
APZ42_008093	APZ42_008562	A0A162BTC2	A0A164EJX8	T-complex protein 1 subunit theta.	T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family.	0.453
APZ42_008093	APZ42_011412	A0A162BTC2	A0A162SNX3	T-complex protein 1 subunit theta.	T-complex protein 1 subunit gamma.	0.986
APZ42_008093	APZ42_012835	A0A162BTC2	A0A162RG33	T-complex protein 1 subunit theta.	T-complex protein 1 subunit beta.	0.994
APZ42_008093	APZ42_018443	A0A162BTC2	A0A164Z3K5	T-complex protein 1 subunit theta.	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	0.992
APZ42_008093	APZ42_019565	A0A162BTC2	A0A0P5ZK33	T-complex protein 1 subunit theta.	T-complex protein 1 subunit zeta.	0.992
APZ42_008093	APZ42_020734	A0A162BTC2	A0A0N8CEK0	T-complex protein 1 subunit theta.	T-complex protein 1 subunit epsilon.	0.993
APZ42_008093	APZ42_034295	A0A162BTC2	A0A0P5WDI2	T-complex protein 1 subunit theta.	60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family.	0.863
APZ42_008093	EOG090X033I	A0A162BTC2	A0A0P5W1F5	T-complex protein 1 subunit theta.	T-complex protein 1 subunit alpha.	0.992
APZ42_008093	EOG090X03U0	A0A162BTC2	A0A164VFC7	T-complex protein 1 subunit theta.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.994