(8 nodes) F-box-like network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_027425	F-box/WD repeat-containing protein 5. (643 aa)
	APZ42_018799	F-box/LRR-repeat protein. (631 aa)
	EOG090X05GA	F-box/LRR-repeat protein 14. (429 aa)
	APZ42_015200	F-box/WD repeat-containing protein 4. (450 aa)
	APZ42_030322	WD_REPEATS_REGION domain-containing protein. (344 aa)
	APZ42_019168	F-box domain-containing protein. (159 aa)
	APZ42_034401	Transmembrane protein 183B. (346 aa)
	APZ42_031646	F-box/LRR-repeat protein. (910 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_015200	APZ42_027425	A0A162P9P1	A0A164RLJ3	F-box/WD repeat-containing protein 4.	F-box/WD repeat-containing protein 5.	0.616
APZ42_018799	APZ42_030322	A0A0N8AR27	A0A164NUW9	F-box/LRR-repeat protein.	WD_REPEATS_REGION domain-containing protein.	0.500
APZ42_027425	APZ42_015200	A0A164RLJ3	A0A162P9P1	F-box/WD repeat-containing protein 5.	F-box/WD repeat-containing protein 4.	0.616
APZ42_027425	EOG090X05GA	A0A164RLJ3	A0A0P6DJR4	F-box/WD repeat-containing protein 5.	F-box/LRR-repeat protein 14.	0.550
APZ42_030322	APZ42_018799	A0A164NUW9	A0A0N8AR27	WD_REPEATS_REGION domain-containing protein.	F-box/LRR-repeat protein.	0.500
APZ42_030322	EOG090X05GA	A0A164NUW9	A0A0P6DJR4	WD_REPEATS_REGION domain-containing protein.	F-box/LRR-repeat protein 14.	0.524
EOG090X05GA	APZ42_027425	A0A0P6DJR4	A0A164RLJ3	F-box/LRR-repeat protein 14.	F-box/WD repeat-containing protein 5.	0.550
EOG090X05GA	APZ42_030322	A0A0P6DJR4	A0A164NUW9	F-box/LRR-repeat protein 14.	WD_REPEATS_REGION domain-containing protein.	0.524