(7 nodes) (2018) Molecular characterization of putative neuropeptide, amine, diffusible gas and small molecule transmitter biosynthetic enzymes in the eyestalk ganglia of the American lobster, Homarus americanus. network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_023355	Nitric oxide synthase. (112 aa)
	APZ42_023681	Nitric oxide synthase; Produces nitric oxide (NO). (1262 aa)
	APZ42_031389	Peptidylglycine alpha-hydroxylating monooxygenase. (351 aa)
	APZ42_015817	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. (257 aa)
	APZ42_016492	Histidine decarboxylase. (675 aa)
	APZ42_022057	Nitric oxide synthase; Produces nitric oxide (NO). (1157 aa)
	APZ42_029010	Peptidyl-alpha-hydroxyglycine alpha-amidating lyase 2. (822 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_015817	APZ42_022057	A0A162NAK8	A0A164W0F0	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Nitric oxide synthase; Produces nitric oxide (NO).	0.542
APZ42_015817	APZ42_023355	A0A162NAK8	A0A164V0W9	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Nitric oxide synthase.	0.542
APZ42_015817	APZ42_023681	A0A162NAK8	A0A164UPI1	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	Nitric oxide synthase; Produces nitric oxide (NO).	0.542
APZ42_022057	APZ42_015817	A0A164W0F0	A0A162NAK8	Nitric oxide synthase; Produces nitric oxide (NO).	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	0.542
APZ42_022057	APZ42_023355	A0A164W0F0	A0A164V0W9	Nitric oxide synthase; Produces nitric oxide (NO).	Nitric oxide synthase.	0.564
APZ42_023355	APZ42_015817	A0A164V0W9	A0A162NAK8	Nitric oxide synthase.	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	0.542
APZ42_023355	APZ42_022057	A0A164V0W9	A0A164W0F0	Nitric oxide synthase.	Nitric oxide synthase; Produces nitric oxide (NO).	0.564
APZ42_023681	APZ42_015817	A0A164UPI1	A0A162NAK8	Nitric oxide synthase; Produces nitric oxide (NO).	Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.	0.542