(25 nodes) Ubiquitin homologues network (Daphnia magna)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_011298	Ubiquitin carboxyl-terminal hydrolase. (490 aa)
	APZ42_013309	UV excision repair protein RAD23 B. (384 aa)
	APZ42_025675	Dna-damage inducible protein ddi1. (425 aa)
	APZ42_025544	Ubiquitin domain-containing protein UBFD1. (245 aa)
	APZ42_020468	NFATC2-interacting protein. (318 aa)
	APZ42_021643	Splicing factor 3A subunit 1. (737 aa)
	APZ42_029561	Small ubiquitin-related modifier 1. (129 aa)
	APZ42_005840	Polyubiquitin-B. (124 aa)
	APZ42_029056	Ubiquilin-2. (568 aa)
	APZ42_026325	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (1107 aa)
	APZ42_015270	Ubiquitin domain-containing CTD phosphatase 1. (317 aa)
	EOG090X0JP1	Transcription elongation factor B polypeptide 2. (120 aa)
	APZ42_012381	E3 ubiquitin-protein ligase UHRF1. (1104 aa)
	APZ42_011555	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin domain member 2-like protein. (384 aa)
	APZ42_011695	Ubiquitin protein 4A. (133 aa)
	APZ42_031040	Ubiquitin-60S ribosomal protein L40. (128 aa)
	EOG090X097L	EOG090X097L. (301 aa)
	APZ42_031019	Uncharacterized protein. (891 aa)
	APZ42_029819	Ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2380 aa)
	APZ42_027881	Ubiquitin-like domain-containing protein. (333 aa)
	APZ42_027865	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (174 aa)
	APZ42_023975	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. (409 aa)
	APZ42_024307	Putative RanBP-type and C3HC4-type zinc finger-containing protein 1. (509 aa)
	APZ42_022859	UV excision repair RAD23 A-like protein. (1159 aa)
	APZ42_021729	Polyubiquitin-B. (611 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_005840	APZ42_011298	A0A162CSN9	A0A0N8E077	Polyubiquitin-B.	Ubiquitin carboxyl-terminal hydrolase.	0.979
APZ42_005840	APZ42_013309	A0A162CSN9	A0A0P4YMJ9	Polyubiquitin-B.	UV excision repair protein RAD23 B.	0.975
APZ42_005840	APZ42_015270	A0A162CSN9	A0A162PB89	Polyubiquitin-B.	Ubiquitin domain-containing CTD phosphatase 1.	0.817
APZ42_005840	APZ42_020468	A0A162CSN9	A0A0P5FE93	Polyubiquitin-B.	NFATC2-interacting protein.	0.721
APZ42_005840	APZ42_021729	A0A162CSN9	A0A164WHS6	Polyubiquitin-B.	Polyubiquitin-B.	0.900
APZ42_005840	APZ42_022859	A0A162CSN9	A0A164VVH4	Polyubiquitin-B.	UV excision repair RAD23 A-like protein.	0.721
APZ42_005840	APZ42_023975	A0A162CSN9	A0A164UB81	Polyubiquitin-B.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.	0.979
APZ42_005840	APZ42_024307	A0A162CSN9	A0A164UNM2	Polyubiquitin-B.	Putative RanBP-type and C3HC4-type zinc finger-containing protein 1.	0.941
APZ42_005840	APZ42_025544	A0A162CSN9	A0A0P5AB51	Polyubiquitin-B.	Ubiquitin domain-containing protein UBFD1.	0.817
APZ42_005840	APZ42_025675	A0A162CSN9	A0A0P4ZYN6	Polyubiquitin-B.	Dna-damage inducible protein ddi1.	0.863
APZ42_005840	APZ42_026325	A0A162CSN9	A0A162DBE7	Polyubiquitin-B.	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.	0.819
APZ42_005840	APZ42_027865	A0A162CSN9	A0A164R027	Polyubiquitin-B.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.887
APZ42_005840	APZ42_027881	A0A162CSN9	A0A164QZP1	Polyubiquitin-B.	Ubiquitin-like domain-containing protein.	0.797
APZ42_005840	APZ42_029056	A0A162CSN9	A0A162D5M0	Polyubiquitin-B.	Ubiquilin-2.	0.965
APZ42_005840	APZ42_029561	A0A162CSN9	A0A0P6GQ96	Polyubiquitin-B.	Small ubiquitin-related modifier 1.	0.757
APZ42_005840	APZ42_029819	A0A162CSN9	A0A164PAD7	Polyubiquitin-B.	Ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family.	0.656
APZ42_005840	APZ42_031040	A0A162CSN9	A0A164N724	Polyubiquitin-B.	Ubiquitin-60S ribosomal protein L40.	0.998
APZ42_005840	EOG090X0JP1	A0A162CSN9	A0A162RIY9	Polyubiquitin-B.	Transcription elongation factor B polypeptide 2.	0.739
APZ42_011298	APZ42_005840	A0A0N8E077	A0A162CSN9	Ubiquitin carboxyl-terminal hydrolase.	Polyubiquitin-B.	0.979
APZ42_011298	APZ42_011695	A0A0N8E077	A0A162SWQ0	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin protein 4A.	0.817