(47 nodes) beta-Alanine metabolism network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_014171	Peroxisomal N-acetyl-spermine/spermidine oxidase. (499 aa)
	APZ42_015807	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (350 aa)
	APZ42_026291	4-trimethylaminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (470 aa)
	APZ42_011144	Trifunctional enzyme subunit alpha. (658 aa)
	APZ42_004017	Aldehyde dehydrogenase family 7 member A1. (86 aa)
	APZ42_005755	AAA_31 domain-containing protein. (169 aa)
	APZ42_003058	Dihydropyrimidine dehydrogenase. (319 aa)
	APZ42_004213	Putative Retinal dehydrogenase 1. (109 aa)
	APZ42_008093	T-complex protein 1 subunit theta. (76 aa)
	APZ42_026541	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (497 aa)
	APZ42_028207	3-hydroxypropionyl-Coenzyme A dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (300 aa)
	APZ42_024537	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (496 aa)
	APZ42_017383	Enoyl-CoA hydratase, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family. (295 aa)
	APZ42_022617	Peroxisomal n1-acetyl-spermine/spermidine oxidase. (464 aa)
	APZ42_025542	Cytosolic Fe-S cluster assembly factor NUBP1 homolog; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP1/NBP35 subfamily. (315 aa)
	APZ42_034123	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (691 aa)
	APZ42_011799	G-protein coupled receptor. (1605 aa)
	APZ42_029379	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial. (525 aa)
	APZ42_022388	Cytosolic Fe-S cluster assembly factor NUBP2 homolog; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP2/CFD1 subfamily. (275 aa)
	APZ42_017016	Malonyl-CoA decarboxylase, mitochondrial. (581 aa)
	APZ42_022794	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase. (498 aa)
	APZ42_022418	Iron-sulfur protein NUBPL. (308 aa)
	APZ42_033818	Dihydropyrimidinase-related protein 5. (611 aa)
	APZ42_017008	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (659 aa)
	APZ42_016751	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (672 aa)
	APZ42_020699	Aldehyde dehydrogenase family 8 member A1; Belongs to the aldehyde dehydrogenase family. (484 aa)
	APZ42_022792	Glutamate decarboxylase. (513 aa)
	APZ42_023434	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family. (645 aa)
	APZ42_024553	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (539 aa)
	APZ42_025992	Tubulin--tyrosine ligase protein 12. (499 aa)
	APZ42_026008	Uncharacterized protein. (84 aa)
	APZ42_026943	Putative Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family. (496 aa)
	APZ42_030720	Retinal dehydrogenase 1. (108 aa)
	APZ42_030703	Retinal dehydrogenase 1; Belongs to the aldehyde dehydrogenase family. (454 aa)
	APZ42_031583	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (404 aa)
	APZ42_034079	Putative U5 small nuclear ribonucleoprotein 200 kDa helicase. (2128 aa)
	APZ42_034333	Cytosolic non-specific dipeptidase. (474 aa)
	APZ42_001925	Putative Lambda-crystallin. (169 aa)
	APZ42_001998	Putative Trifunctional enzyme subunit alpha. (108 aa)
	APZ42_002190	Putative Aldehyde dehydrogenase. (160 aa)
	APZ42_002597	Uncharacterized protein. (104 aa)
	APZ42_003276	Ornithine aminotransferase-like protein. (249 aa)
	APZ42_004016	Aldehyde dehydrogenase family 7 member A1. (73 aa)
	APZ42_008562	T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family. (355 aa)
	APZ42_012231	Aldehyde dehydrogenase family 8 member A1; Belongs to the aldehyde dehydrogenase family. (524 aa)
	APZ42_012974	Putative T-complex protein 1 subunit theta; Belongs to the TCP-1 chaperonin family. (163 aa)
	APZ42_014172	Spermine oxidase. (526 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001925	APZ42_002190	A0A164IMU7	A0A164IG13	Putative Lambda-crystallin.	Putative Aldehyde dehydrogenase.	0.685
APZ42_001925	APZ42_002597	A0A164IMU7	A0A164I645	Putative Lambda-crystallin.	Uncharacterized protein.	0.732
APZ42_001925	APZ42_003276	A0A164IMU7	A0A164HNE6	Putative Lambda-crystallin.	Ornithine aminotransferase-like protein.	0.543
APZ42_001925	APZ42_004016	A0A164IMU7	A0A164HAW7	Putative Lambda-crystallin.	Aldehyde dehydrogenase family 7 member A1.	0.566
APZ42_001925	APZ42_004017	A0A164IMU7	A0A162CVW8	Putative Lambda-crystallin.	Aldehyde dehydrogenase family 7 member A1.	0.566
APZ42_001925	APZ42_004213	A0A164IMU7	A0A162C147	Putative Lambda-crystallin.	Putative Retinal dehydrogenase 1.	0.533
APZ42_001925	APZ42_012231	A0A164IMU7	A0A162S8S0	Putative Lambda-crystallin.	Aldehyde dehydrogenase family 8 member A1; Belongs to the aldehyde dehydrogenase family.	0.533
APZ42_001925	APZ42_015807	A0A164IMU7	A0A162NB18	Putative Lambda-crystallin.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.651
APZ42_001925	APZ42_016751	A0A164IMU7	A0A165A5H7	Putative Lambda-crystallin.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.819
APZ42_001925	APZ42_017008	A0A164IMU7	A0A165AAN5	Putative Lambda-crystallin.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.819
APZ42_001925	APZ42_017383	A0A164IMU7	A0A0P5E7Q2	Putative Lambda-crystallin.	Enoyl-CoA hydratase, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.	0.732
APZ42_001925	APZ42_020699	A0A164IMU7	A0A164XCD8	Putative Lambda-crystallin.	Aldehyde dehydrogenase family 8 member A1; Belongs to the aldehyde dehydrogenase family.	0.533
APZ42_001925	APZ42_024537	A0A164IMU7	A0A0N8CZN7	Putative Lambda-crystallin.	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.557
APZ42_001925	APZ42_024553	A0A164IMU7	A0A164TYQ6	Putative Lambda-crystallin.	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.557
APZ42_001925	APZ42_026291	A0A164IMU7	A0A162EDM9	Putative Lambda-crystallin.	4-trimethylaminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.533
APZ42_001925	APZ42_026541	A0A164IMU7	A0A0P6CX18	Putative Lambda-crystallin.	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.557
APZ42_001925	APZ42_026943	A0A164IMU7	A0A164RTP3	Putative Lambda-crystallin.	Putative Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.	0.566
APZ42_001925	APZ42_028207	A0A164IMU7	A0A0P6B028	Putative Lambda-crystallin.	3-hydroxypropionyl-Coenzyme A dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.687
APZ42_001925	APZ42_029379	A0A164IMU7	A0A0P5VKV8	Putative Lambda-crystallin.	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.	0.685
APZ42_001925	APZ42_030703	A0A164IMU7	A0A164NIA6	Putative Lambda-crystallin.	Retinal dehydrogenase 1; Belongs to the aldehyde dehydrogenase family.	0.533