(36 nodes) Nitrogen metabolism network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_002595	Putative Glutamate synthase. (154 aa)
	APZ42_002145	Transgly domain-containing protein. (202 aa)
	APZ42_002107	Putative Glutamate synthase. (143 aa)
	APZ42_030786	VIT domain-containing protein. (779 aa)
	APZ42_028334	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (710 aa)
	APZ42_028339	Uncharacterized protein. (187 aa)
	APZ42_024782	ATPase family AAA domain-containing protein 1-A; Belongs to the AAA ATPase family. (301 aa)
	APZ42_023678	Apoptosis-inducing factor 3. (590 aa)
	APZ42_023338	Carbonic anhydrase-related protein; Belongs to the alpha-carbonic anhydrase family. (158 aa)
	APZ42_022293	Putative Alpha-carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family. (412 aa)
	APZ42_022276	Carbonic anhydrase 14; Belongs to the alpha-carbonic anhydrase family. (366 aa)
	APZ42_022534	Putative Alpha-carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family. (288 aa)
	APZ42_022519	Carbonic anhydrase 14; Belongs to the alpha-carbonic anhydrase family. (597 aa)
	APZ42_022102	Alpha-carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family. (314 aa)
	APZ42_020541	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (530 aa)
	APZ42_015076	C3 and PZP alpha-2-macroglobulin domain-containing protein 8. (323 aa)
	APZ42_018780	Glutamine synthetase. (366 aa)
	APZ42_029456	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (444 aa)
	APZ42_014910	Alpha-carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family. (284 aa)
	APZ42_016052	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (417 aa)
	APZ42_019782	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (255 aa)
	APZ42_015080	Carbonic anhydrase 1; Belongs to the alpha-carbonic anhydrase family. (270 aa)
	APZ42_022298	Putative Carbonic anhydrase-related protein; Belongs to the alpha-carbonic anhydrase family. (356 aa)
	APZ42_022147	HEAT repeat-containing protein 3. (646 aa)
	APZ42_018205	Carbonic anhydrase 5B, mitochondrial; Belongs to the alpha-carbonic anhydrase family. (490 aa)
	APZ42_022294	Putative Carbonic anhydrase-related protein; Belongs to the alpha-carbonic anhydrase family. (461 aa)
	APZ42_016747	Uncharacterized protein. (853 aa)
	APZ42_022306	Alpha-carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family. (213 aa)
	APZ42_022385	Carbonic anhydrase-related protein; Belongs to the alpha-carbonic anhydrase family. (315 aa)
	APZ42_019999	Glutamate synthase. (2078 aa)
	APZ42_003025	Pyr_redox_2 domain-containing protein. (170 aa)
	APZ42_016051	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (446 aa)
	APZ42_016049	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (451 aa)
	APZ42_013328	Putative Carbonic anhydrase-related protein; Belongs to the alpha-carbonic anhydrase family. (350 aa)
	APZ42_012866	Carbonic anhydrase 6; Belongs to the alpha-carbonic anhydrase family. (383 aa)
	APZ42_003286	Glutamine synthetase; Belongs to the glutamine synthetase family. (238 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002107	APZ42_002145	A0A164II36	A0A164IH54	Putative Glutamate synthase.	Transgly domain-containing protein.	0.681
APZ42_002107	APZ42_002595	A0A164II36	A0A164I660	Putative Glutamate synthase.	Putative Glutamate synthase.	0.951
APZ42_002107	APZ42_003286	A0A164II36	A0A164HN34	Putative Glutamate synthase.	Glutamine synthetase; Belongs to the glutamine synthetase family.	0.681
APZ42_002107	APZ42_018780	A0A164II36	A0A0P4ZGE0	Putative Glutamate synthase.	Glutamine synthetase.	0.681
APZ42_002107	APZ42_020541	A0A164II36	A0A164X753	Putative Glutamate synthase.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.974
APZ42_002107	APZ42_023678	A0A164II36	A0A164UNY0	Putative Glutamate synthase.	Apoptosis-inducing factor 3.	0.604
APZ42_002145	APZ42_002107	A0A164IH54	A0A164II36	Transgly domain-containing protein.	Putative Glutamate synthase.	0.681
APZ42_002145	APZ42_002595	A0A164IH54	A0A164I660	Transgly domain-containing protein.	Putative Glutamate synthase.	0.681
APZ42_002145	APZ42_003025	A0A164IH54	A0A162CXJ8	Transgly domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.681
APZ42_002145	APZ42_019999	A0A164IH54	A0A162CE36	Transgly domain-containing protein.	Glutamate synthase.	0.681
APZ42_002145	APZ42_020541	A0A164IH54	A0A164X753	Transgly domain-containing protein.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.863
APZ42_002145	APZ42_023678	A0A164IH54	A0A164UNY0	Transgly domain-containing protein.	Apoptosis-inducing factor 3.	0.751
APZ42_002595	APZ42_002107	A0A164I660	A0A164II36	Putative Glutamate synthase.	Putative Glutamate synthase.	0.951
APZ42_002595	APZ42_002145	A0A164I660	A0A164IH54	Putative Glutamate synthase.	Transgly domain-containing protein.	0.681
APZ42_002595	APZ42_003286	A0A164I660	A0A164HN34	Putative Glutamate synthase.	Glutamine synthetase; Belongs to the glutamine synthetase family.	0.789
APZ42_002595	APZ42_018780	A0A164I660	A0A0P4ZGE0	Putative Glutamate synthase.	Glutamine synthetase.	0.868
APZ42_002595	APZ42_020541	A0A164I660	A0A164X753	Putative Glutamate synthase.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.980
APZ42_002595	APZ42_023678	A0A164I660	A0A164UNY0	Putative Glutamate synthase.	Apoptosis-inducing factor 3.	0.604
APZ42_003025	APZ42_002145	A0A162CXJ8	A0A164IH54	Pyr_redox_2 domain-containing protein.	Transgly domain-containing protein.	0.681
APZ42_003025	APZ42_003286	A0A162CXJ8	A0A164HN34	Pyr_redox_2 domain-containing protein.	Glutamine synthetase; Belongs to the glutamine synthetase family.	0.681