60 items (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_028433	Uncharacterized protein. (745 aa)
	APZ42_018319	Homeobox protein PKNOX2. (354 aa)
	APZ42_014221	Fibrillin-1. (2648 aa)
	APZ42_011069	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (553 aa)
	APZ42_029459	Transcription factor E2F4. (283 aa)
	APZ42_019659	Inhibin beta B chain-like protein. (661 aa)
	APZ42_023626	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (509 aa)
	APZ42_012615	Rho-related GTP-binding protein RhoF. (223 aa)
	APZ42_019724	Serine/threonine-protein phosphatase. (309 aa)
	APZ42_030681	Bone morphogenetic protein. (406 aa)
	APZ42_015017	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (549 aa)
	APZ42_031954	Integrator complex subunit 8. (1010 aa)
	APZ42_025705	Putative Fibrillin-1. (1861 aa)
	APZ42_027591	Extra macrochaetae-like protein. (113 aa)
	APZ42_018573	Putative Gremlin-2. (210 aa)
	APZ42_031391	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	APZ42_022790	Uncharacterized protein. (1061 aa)
	APZ42_003083	BMP and activin membrane-bound inhibitor. (204 aa)
	APZ42_011613	Putative Zinc finger FYVE domain-containing protein. (929 aa)
	APZ42_030042	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha. (590 aa)
	APZ42_016151	E3 ubiquitin-protein ligase SMURF2. (690 aa)
	APZ42_015687	Putative Thrombospondin type-1 domain-containing protein 4. (514 aa)
	APZ42_014785	Myc, dMyc-like protein. (178 aa)
	APZ42_014663	Retinoblastoma family protein. (1077 aa)
	APZ42_013896	Putative Pituitary homeobox 2. (1058 aa)
	APZ42_013154	Chordin 1/sw-like protein. (168 aa)
	APZ42_012048	Mothers against decapentaplegic homolog. (536 aa)
	APZ42_004669	Ras GTP-binding protein Rho1. (41 aa)
	APZ42_002671	Uncharacterized protein. (126 aa)
	APZ42_000871	Rho-associated protein kinase 2. (107 aa)
	APZ42_033023	Putative TGF-beta ligand glass bottom boat protein. (459 aa)
	APZ42_032633	RING-box protein 1A. (116 aa)
	APZ42_032773	Fibulin-5. (1994 aa)
	APZ42_032315	Putative TGF-beta ligand Decapentaplegic protein. (466 aa)
	APZ42_031733	Mothers against decapentaplegic homolog. (653 aa)
	APZ42_031023	A disintegrin and metalloproteinase with thrombospondin motifs 10. (230 aa)
	APZ42_028088	Lipid droplet-associated hydrolase. (318 aa)
	APZ42_027182	Tissue factor pathway inhibitor. (1124 aa)
	APZ42_027338	Putative CREB-binding protein. (2063 aa)
	APZ42_027025	CREB-binding-like protein. (545 aa)
	APZ42_026729	Ankyrin repeat and fibronectin type-III domain-containing protein 1. (1459 aa)
	APZ42_026814	Fibulin-5. (772 aa)
	APZ42_026713	Fibrillin-1-like protein. (647 aa)
	APZ42_025177	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (487 aa)
	APZ42_024855	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (514 aa)
	APZ42_024794	E3 ubiquitin-protein ligase SMURF2. (161 aa)
	APZ42_024721	Mothers against decapentaplegic homolog. (467 aa)
	APZ42_024461	RGM_N domain-containing protein. (287 aa)
	APZ42_024081	Extra macrochaetae-like protein. (153 aa)
	APZ42_021494	Homeobox protein AKR. (391 aa)
	APZ42_021454	Putative Bursicon alpha. (161 aa)
	APZ42_021286	RGM_C domain-containing protein. (298 aa)
	APZ42_021232	Neogenin. (918 aa)
	APZ42_020918	Mothers against decapentaplegic homolog. (453 aa)
	EOG090X0B66	Transcription factor. (447 aa)
	APZ42_019728	Rho-associated protein kinase 2. (1082 aa)
	APZ42_018391	Papilin. (2817 aa)
	APZ42_018173	Transforming growth factor beta-3. (577 aa)
	APZ42_017914	Cullin-5; Belongs to the cullin family. (779 aa)
	APZ42_017458	Noggin. (276 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000871	APZ42_004669	A0A164JBM9	A0A164GWT3	Rho-associated protein kinase 2.	Ras GTP-binding protein Rho1.	0.868
APZ42_000871	APZ42_012615	A0A164JBM9	A0A0P5KP21	Rho-associated protein kinase 2.	Rho-related GTP-binding protein RhoF.	0.868
APZ42_000871	APZ42_014663	A0A164JBM9	A0A162PPF2	Rho-associated protein kinase 2.	Retinoblastoma family protein.	0.551
APZ42_000871	APZ42_017914	A0A164JBM9	A0A164ZF56	Rho-associated protein kinase 2.	Cullin-5; Belongs to the cullin family.	0.527
APZ42_000871	APZ42_021232	A0A164JBM9	A0A164WUR8	Rho-associated protein kinase 2.	Neogenin.	0.512
APZ42_000871	APZ42_021286	A0A164JBM9	A0A164WT67	Rho-associated protein kinase 2.	RGM_C domain-containing protein.	0.467
APZ42_000871	APZ42_024461	A0A164JBM9	A0A164U0L8	Rho-associated protein kinase 2.	RGM_N domain-containing protein.	0.467
APZ42_000871	APZ42_031391	A0A164JBM9	A0A0P6ESR7	Rho-associated protein kinase 2.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.560
APZ42_000871	APZ42_032633	A0A164JBM9	A0A164LRT1	Rho-associated protein kinase 2.	RING-box protein 1A.	0.444
APZ42_002671	APZ42_018173	A0A164I475	A0A164ZAT8	Uncharacterized protein.	Transforming growth factor beta-3.	0.636
APZ42_002671	APZ42_019659	A0A164I475	A0A0P4YA70	Uncharacterized protein.	Inhibin beta B chain-like protein.	0.636
APZ42_002671	APZ42_030681	A0A164I475	A0A0P5TP47	Uncharacterized protein.	Bone morphogenetic protein.	0.743
APZ42_002671	APZ42_031733	A0A164I475	A0A164MMD6	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.400
APZ42_002671	APZ42_032315	A0A164I475	A0A164M3F8	Uncharacterized protein.	Putative TGF-beta ligand Decapentaplegic protein.	0.896
APZ42_002671	APZ42_033023	A0A164I475	A0A164LGI4	Uncharacterized protein.	Putative TGF-beta ligand glass bottom boat protein.	0.791
APZ42_003083	APZ42_011069	A0A162CXH5	A0A0N8CKI7	BMP and activin membrane-bound inhibitor.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.702
APZ42_003083	APZ42_012048	A0A162CXH5	A0A162S1Y3	BMP and activin membrane-bound inhibitor.	Mothers against decapentaplegic homolog.	0.825
APZ42_003083	APZ42_015017	A0A162CXH5	A0A0P5UYD1	BMP and activin membrane-bound inhibitor.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.774
APZ42_003083	APZ42_018173	A0A162CXH5	A0A164ZAT8	BMP and activin membrane-bound inhibitor.	Transforming growth factor beta-3.	0.494
APZ42_003083	APZ42_019659	A0A162CXH5	A0A0P4YA70	BMP and activin membrane-bound inhibitor.	Inhibin beta B chain-like protein.	0.494