(22 nodes) SNAP receptor activity, and Syntaxin binding network (Valsa malicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VMCG_10160	AAA domain-containing protein. (710 aa)
	VMCG_09438	t-SNARE coiled-coil homology domain-containing protein. (404 aa)
	VMCG_08946	t-SNARE coiled-coil homology domain-containing protein. (273 aa)
	VMCG_08909	Uncharacterized protein. (835 aa)
	VMCG_06291	GRASP55_65 domain-containing protein. (378 aa)
	VMCG_06473	t-SNARE coiled-coil homology domain-containing protein. (334 aa)
	VMCG_06500	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (701 aa)
	VMCG_06151	WD_REPEATS_REGION domain-containing protein. (991 aa)
	VMCG_05713	Uncharacterized protein. (97 aa)
	VMCG_05464	Uncharacterized protein. (178 aa)
	VMCG_05388	Uncharacterized protein. (1005 aa)
	VMCG_05394	Uncharacterized protein. (292 aa)
	VMCG_05186	Uncharacterized protein. (272 aa)
	VMCG_02993	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	VMCG_02464	Uncharacterized protein; Belongs to the synaptobrevin family. (151 aa)
	VMCG_02255	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (736 aa)
	VMCG_02452	Uncharacterized protein; Belongs to the synaptobrevin family. (234 aa)
	VMCG_01738	t-SNARE coiled-coil homology domain-containing protein. (319 aa)
	VMCG_01973	V-SNARE coiled-coil homology domain-containing protein. (112 aa)
	VMCG_01215	Uncharacterized protein. (1378 aa)
	VMCG_01073	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (248 aa)
	VMCG_01410	t-SNARE coiled-coil homology domain-containing protein. (621 aa)

Your Current Organism:

Valsa malicola

NCBI taxonomy Id: 356882
Other names: V. malicola

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VMCG_01073	VMCG_01215	A0A423X5T7	A0A423X4U2	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.973
VMCG_01073	VMCG_01410	A0A423X5T7	A0A423X6P9	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	t-SNARE coiled-coil homology domain-containing protein.	0.636
VMCG_01073	VMCG_01738	A0A423X5T7	A0A423X384	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	t-SNARE coiled-coil homology domain-containing protein.	0.999
VMCG_01073	VMCG_01973	A0A423X5T7	A0A423X3R8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	V-SNARE coiled-coil homology domain-containing protein.	0.935
VMCG_01073	VMCG_02452	A0A423X5T7	A0A423X1M5	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.454
VMCG_01073	VMCG_02464	A0A423X5T7	A0A423X104	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.998
VMCG_01073	VMCG_02993	A0A423X5T7	A0A423WZK8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.984
VMCG_01073	VMCG_05186	A0A423X5T7	A0A423WQN8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.999
VMCG_01073	VMCG_05388	A0A423X5T7	A0A423WKI8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.979
VMCG_01073	VMCG_05394	A0A423X5T7	A0A423WKR3	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.935
VMCG_01073	VMCG_05464	A0A423X5T7	A0A423WK78	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.999
VMCG_01073	VMCG_05713	A0A423X5T7	A0A423WHW4	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.979
VMCG_01073	VMCG_06291	A0A423X5T7	A0A423W9C6	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	GRASP55_65 domain-containing protein.	0.732
VMCG_01073	VMCG_06473	A0A423X5T7	A0A423WBM8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	t-SNARE coiled-coil homology domain-containing protein.	0.622
VMCG_01073	VMCG_06500	A0A423X5T7	A0A423WBR0	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.984
VMCG_01073	VMCG_08909	A0A423X5T7	A0A423VNJ8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Uncharacterized protein.	0.833
VMCG_01073	VMCG_08946	A0A423X5T7	A0A423VNF4	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	t-SNARE coiled-coil homology domain-containing protein.	0.946
VMCG_01073	VMCG_09438	A0A423X5T7	A0A423VKG9	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	t-SNARE coiled-coil homology domain-containing protein.	0.622
VMCG_01073	VMCG_10160	A0A423X5T7	A0A423VDF1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	AAA domain-containing protein.	0.663
VMCG_01215	VMCG_01073	A0A423X4U2	A0A423X5T7	Uncharacterized protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.973