(25 nodes) SNARE interactions in vesicular transport network (Valsa malicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VMCG_05186	Uncharacterized protein. (272 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (654 aa)
	VMCG_02993	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	MED6	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (321 aa)
	VMCG_02754	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (564 aa)
	VMCG_02464	Uncharacterized protein; Belongs to the synaptobrevin family. (151 aa)
	VMCG_02452	Uncharacterized protein; Belongs to the synaptobrevin family. (234 aa)
	VMCG_01738	t-SNARE coiled-coil homology domain-containing protein. (319 aa)
	VMCG_01973	V-SNARE coiled-coil homology domain-containing protein. (112 aa)
	VMCG_01073	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (248 aa)
	VMCG_01229	Uncharacterized protein. (437 aa)
	VMCG_09524	t-SNARE coiled-coil homology domain-containing protein. (226 aa)
	VMCG_01410	t-SNARE coiled-coil homology domain-containing protein. (621 aa)
	VMCG_00406	Uncharacterized protein. (349 aa)
	VMCG_09438	t-SNARE coiled-coil homology domain-containing protein. (404 aa)
	VMCG_05109	t-SNARE coiled-coil homology domain-containing protein. (381 aa)
	VMCG_05031	PHD-type domain-containing protein. (428 aa)
	VMCG_05464	Uncharacterized protein. (178 aa)
	VMCG_05713	Uncharacterized protein. (97 aa)
	VMCG_06146	Histone chaperone; Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly. (277 aa)
	VMCG_06473	t-SNARE coiled-coil homology domain-containing protein. (334 aa)
	VMCG_08946	t-SNARE coiled-coil homology domain-containing protein. (273 aa)
	VMCG_02691	t-SNARE coiled-coil homology domain-containing protein. (256 aa)
	VMCG_03987	t-SNARE coiled-coil homology domain-containing protein. (317 aa)
	VMCG_10034	Uncharacterized protein. (388 aa)

Your Current Organism:

Valsa malicola

NCBI taxonomy Id: 356882
Other names: V. malicola

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NOP7	VMCG_01229	A0A423WWK3	A0A423X5W7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.571
VMCG_00406	VMCG_01073	A0A423X952	A0A423X5T7	Uncharacterized protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.759
VMCG_00406	VMCG_01229	A0A423X952	A0A423X5W7	Uncharacterized protein.	Uncharacterized protein.	0.536
VMCG_00406	VMCG_01410	A0A423X952	A0A423X6P9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.572
VMCG_00406	VMCG_01738	A0A423X952	A0A423X384	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.897
VMCG_00406	VMCG_01973	A0A423X952	A0A423X3R8	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.616
VMCG_00406	VMCG_02452	A0A423X952	A0A423X1M5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.525
VMCG_00406	VMCG_02464	A0A423X952	A0A423X104	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.917
VMCG_00406	VMCG_02691	A0A423X952	A0A423WZD9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.615
VMCG_00406	VMCG_02993	A0A423X952	A0A423WZK8	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.985
VMCG_00406	VMCG_03987	A0A423X952	A0A423WUN0	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.561
VMCG_00406	VMCG_05109	A0A423X952	A0A423WMZ5	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.998
VMCG_00406	VMCG_05186	A0A423X952	A0A423WQN8	Uncharacterized protein.	Uncharacterized protein.	0.892
VMCG_00406	VMCG_05464	A0A423X952	A0A423WK78	Uncharacterized protein.	Uncharacterized protein.	0.825
VMCG_00406	VMCG_05713	A0A423X952	A0A423WHW4	Uncharacterized protein.	Uncharacterized protein.	0.764
VMCG_00406	VMCG_06473	A0A423X952	A0A423WBM8	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.472
VMCG_00406	VMCG_08946	A0A423X952	A0A423VNF4	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.740
VMCG_00406	VMCG_09438	A0A423X952	A0A423VKG9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.472
VMCG_00406	VMCG_09524	A0A423X952	A0A423VLZ7	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.603
VMCG_00406	VMCG_10034	A0A423X952	A0A423VI44	Uncharacterized protein.	Uncharacterized protein.	0.580