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| | Cphy_1507 | PFAM: protein of unknown function DUF74; KEGG: ckl:CKL_2433 hypothetical protein; Belongs to the UPF0145 family. (178 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (642 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (899 aa) |
| | Cphy_0021 | PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_1373 RpsA. (303 aa) |
| | Cphy_0047 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (119 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | Cphy_0105 | SMART: AAA ATPase; KEGG: cno:NT01CX_0917 DNA replication protein DnaC, putative; Belongs to the DnaA family. (334 aa) |
| | Cphy_0106 | TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: tte:TTE2692 hypothetical protein. (370 aa) |
| | Cphy_0130 | PFAM: Patatin; KEGG: aha:AHA_2929 patatin. (334 aa) |
| | mutS2 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (796 aa) |
| | Cphy_0189 | PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbe:Cbei_0409 CMP/dCMP deaminase, zinc-binding. (162 aa) |
| | rpsL | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. (140 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | Cphy_0295 | PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: cno:NT01CX_0861 DNA gyrase, A subunit. (748 aa) |
| | Cphy_0296 | DNA topoisomerase (ATP-hydrolyzing); KEGG: gka:GK0005 DNA gyrase subunit B; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II. (642 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (70 aa) |
| | rpmI | PFAM: ribosomal protein L35; KEGG: cbf:CLI_3194 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa) |
| | Cphy_0502 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 ATPase, AAA family. (444 aa) |
| | Cphy_0591 | PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680. (646 aa) |
| | Cphy_0645 | PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cbf:CLI_3481 putative peptidase; Belongs to the peptidase M16 family. (992 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (246 aa) |
| | Cphy_0935 | HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein. (638 aa) |
| | selO | Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (484 aa) |
| | murQ | Glucokinase regulatory-like protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (297 aa) |
| | Cphy_1150 | PFAM: protein of unknown function DUF77; KEGG: dsy:DSY4448 hypothetical protein. (99 aa) |
| | Cphy_1154 | KEGG: cac:CAC2687 RecQ protein, superfamily II DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases. (617 aa) |
| | Cphy_1176 | PFAM: microcompartments protein; KEGG: ckl:CKL_3417 hypothetical protein. (119 aa) |
| | Cphy_1180 | PFAM: microcompartments protein; KEGG: spc:Sputcn32_0210 microcompartments protein. (104 aa) |
| | Cphy_1181 | PFAM: microcompartments protein; KEGG: aha:AHA_1336 bacterial microcompartments family protein. (100 aa) |
| | Cphy_1182 | PFAM: microcompartments protein; KEGG: ckl:CKL_1072 predicted microcompartment protein. (164 aa) |
| | pduL | Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (213 aa) |
| | Cphy_1184 | PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lwe:lwe1121 ethanolamine and carbon dioxide metabolism. (86 aa) |
| | Cphy_1186 | PFAM: microcompartments protein; KEGG: drm:Dred_3269 microcompartments protein. (182 aa) |
| | Cphy_1203 | PFAM: Glycosyltransferase 28 domain; KEGG: cth:Cthe_1359 glycosyltransferase 28-like protein. (169 aa) |
| | Cphy_1218 | DNA mismatch repair protein MutS domain protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (654 aa) |
| | nfo | Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. (300 aa) |
| | rpmF | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: chy:CHY_1453 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | hemA1 | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (403 aa) |
| | Cphy_1411 | PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein. (96 aa) |
| | Cphy_1414 | PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein. (98 aa) |
| | Cphy_1415 | PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein. (102 aa) |
| | Cphy_1419 | PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS. (113 aa) |
| | Cphy_1420 | KEGG: cbh:CLC_2057 GTP-binding protein, EutP/PduV family; Belongs to the EutP/PduV family. (143 aa) |
| | Cphy_1422 | KEGG: cbh:CLC_2056 hypothetical protein. (211 aa) |
| | Cphy_1424 | PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein. (101 aa) |
| | Cphy_1425 | PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 putative polyhedral organelle formation protein. (87 aa) |
| | Cphy_1426 | PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2153 ethanolamine utilization protein EutQ-like protein. (209 aa) |
| | Cphy_1427 | PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein. (228 aa) |
| | Cphy_1429 | Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (211 aa) |
| | Cphy_1430 | PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein. (94 aa) |
| | Cphy_1554 | Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bcy:Bcer98_3869 helix-turn-helix domain protein. (310 aa) |
| | Cphy_1672 | PFAM: protein of unknown function DUF985; KEGG: cbf:CLI_0821 hypothetical protein. (167 aa) |
| | Cphy_1707 | KEGG: ani:AN4010.2 hypothetical protein. (630 aa) |
| | hemA2 | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (413 aa) |
| | rplY | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (193 aa) |
| | Cphy_1972 | PFAM: protein of unknown function DUF362; KEGG: drm:Dred_1308 protein of unknown function DUF362. (308 aa) |
| | Cphy_2190 | Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase. (435 aa) |
| | Cphy_2205 | KEGG: amt:Amet_1757 IstB domain protein ATP-binding protein. (76 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa) |
| | Cphy_2360 | PFAM: RNA-binding S4 domain protein; KEGG: cdf:CD2620 putative RNA-binding cell division protein. (263 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (313 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (169 aa) |
| | rpsP | PFAM: ribosomal protein S16; KEGG: cno:NT01CX_2212 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (81 aa) |
| | Cphy_2425 | KEGG: dsy:DSY0156 hypothetical protein. (145 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1185 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (792 aa) |
| | Cphy_2499 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (561 aa) |
| | nadD | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (200 aa) |
| | rpmA | PFAM: ribosomal protein L27; KEGG: cpr:CPR_2095 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (95 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa) |
| | rpsU | PFAM: ribosomal protein S21; KEGG: cpr:CPR_1995 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (58 aa) |
| | Cphy_2634 | PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: cdf:CD1925 putative ethanolamine/propanediol utilization protein. (152 aa) |
| | Cphy_2636 | PFAM: microcompartments protein; KEGG: cdf:CD1923 putative ethanolamine/propanediol utilization protein. (185 aa) |
| | Cphy_2637 | PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN. (91 aa) |
| | Cphy_2639 | Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (215 aa) |
| | Cphy_2640 | PFAM: cobalamin adenosyltransferase; KEGG: cpf:CPF_0897 ethanolamine utilization cobalamin adenosyltransferase. (265 aa) |
| | Cphy_2641 | PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein. (96 aa) |
| | Cphy_2643 | PFAM: microcompartments protein; KEGG: ckl:CKL_0845 predicted microcompartment shellprotein. (363 aa) |
| | Cphy_2644 | PFAM: microcompartments protein; KEGG: cdf:CD1915 putative ethanolamine/propanediol utilization protein. (218 aa) |
| | eutC | PFAM: Ethanolamine ammonia-lyase light chain; KEGG: cpf:CPF_0892 ethanolamine ammonia-lyase, small subunit; Belongs to the EutC family. (296 aa) |
| | Cphy_2647 | PFAM: Ethanolamine utilisation EutA; KEGG: cpf:CPF_0890 ethanolamine utilization protein EutA. (489 aa) |
| | Cphy_2648 | TIGRFAM: ethanolamine utilization protein, EutP; KEGG: cpf:CPF_0887 ethanolamine utilization protein, EutP; Belongs to the EutP/PduV family. (149 aa) |
| | Cphy_2649 | PFAM: microcompartments protein; KEGG: cdf:CD1908 putative ethanolamine/propanediol utilization protein. (117 aa) |
| | rpsB | PFAM: ribosomal protein S2; KEGG: bld:BLi01870 ribosomal protein S2; RBL02224; Belongs to the universal ribosomal protein uS2 family. (246 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (690 aa) |
| | rpsO | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (88 aa) |
| | Cphy_2770 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF; Belongs to the ribF family. (317 aa) |
| | Cphy_2775 | PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cdf:CD1308 putative ribosomal protein. (115 aa) |
| | rpmB | PFAM: ribosomal protein L28; KEGG: swo:Swol_0757 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (65 aa) |
| | Cphy_2924 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: mbu:Mbur_1539 DNA-cytosine methyltransferase. (537 aa) |
| | Cphy_2985 | PFAM: zinc finger CHC2-family protein; KEGG: ppd:Ppro_0215 zinc finger, CHC2-family protein. (166 aa) |
| | Cphy_3023 | Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase. (435 aa) |
| | Cphy_3028 | Alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase. (470 aa) |
| | Cphy_3272 | KEGG: amt:Amet_1141 DNA topoisomerase, type IA, central domain protein; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein. (721 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (596 aa) |
| | rpsI | PFAM: ribosomal protein S9; KEGG: ctc:CTC02571 SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (144 aa) |
| | rplQ | PFAM: ribosomal protein L17; KEGG: cth:Cthe_2933 ribosomal protein L17. (178 aa) |
| | rpsD | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (198 aa) |
| | rpsK | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (132 aa) |
| | rpsM | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (122 aa) |
| | rpmJ | PFAM: ribosomal protein L36; KEGG: csc:Csac_2263 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | PFAM: ribosomal protein L30; KEGG: spd:SPD_0211 ribosomal protein L30. (60 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (168 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (122 aa) |
| | rplF | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (180 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (133 aa) |
| | Cphy_3654 | PFAM: ribosomal protein S14; KEGG: amt:Amet_4465 ribosomal protein S14. (56 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rplX | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (105 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rpmC | PFAM: ribosomal protein L29; KEGG: rsq:Rsph17025_2526 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (69 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (145 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (219 aa) |
| | rplV | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (128 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (281 aa) |
| | rplW | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (99 aa) |
| | rplD | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (206 aa) |
| | rplC | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (211 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (105 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (120 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (164 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (230 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | rpmG | PFAM: ribosomal protein L33; KEGG: amt:Amet_4493 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | Cphy_3756 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (442 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (148 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (91 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (95 aa) |
| | ispE | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (291 aa) |
| | Cphy_3924 | PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family. (220 aa) |
| | Cphy_3933 | KEGG: cbf:CLI_3882 hypothetical protein. (170 aa) |
| | Cphy_3934 | TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbh:CLC_3637 stage 0 sporulation protein J; Belongs to the ParB family. (295 aa) |
| | rpmH | PFAM: ribosomal protein L34; KEGG: lre:Lreu_1944 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
