STRINGSTRING
Cphy_0603 Cphy_0603 Cphy_1174 Cphy_1174 fabV fabV Cphy_1428 Cphy_1428 Cphy_1925 Cphy_1925 Cphy_2434 Cphy_2434 Cphy_2435 Cphy_2435 Cphy_2436 Cphy_2436 Cphy_2463 Cphy_2463 Cphy_2642 Cphy_2642 Cphy_2821 Cphy_2821 Cphy_2823 Cphy_2823 Cphy_3021 Cphy_3021 Cphy_3122 Cphy_3122 Cphy_3123 Cphy_3123 Cphy_3299 Cphy_3299 Cphy_3347 Cphy_3347 Cphy_3558 Cphy_3558 Cphy_3925 Cphy_3925
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cphy_0603PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase. (1178 aa)
Cphy_1174KEGG: cno:NT01CX_0498 pyruvate formate-lyase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL. (867 aa)
fabVTrans-2-enoyl-CoA reductase (NAD(+)); Involved in the fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to a coenzyme A (CoA); Belongs to the TER reductase family. (386 aa)
Cphy_1428TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cbh:CLC_2050 acetaldehyde dehydrogenase (acetylating). (515 aa)
Cphy_1925Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). (380 aa)
Cphy_2434Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). (360 aa)
Cphy_2435PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein. (134 aa)
Cphy_2436Sodium pump decarboxylase gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family. (111 aa)
Cphy_2463PFAM: iron-containing alcohol dehydrogenase; KEGG: cbf:CLI_1505 NADH-dependent butanol dehydrogenase. (390 aa)
Cphy_2642TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase_; KEGG: cdf:CD1917 putative ethanolamine/propanediol utilisation aldehyde-alcohol dehydrogenase. (495 aa)
Cphy_2821PFAM: formate C-acetyltransferase glycine radical; KEGG: bcy:Bcer98_0431 formate acetyltransferase. (82 aa)
Cphy_2823KEGG: bcy:Bcer98_0431 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL. (686 aa)
Cphy_3021TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cbe:Cbei_0212 acetolactate synthase, small subunit. (166 aa)
Cphy_3122KEGG: cbe:Cbei_3642 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding. (281 aa)
Cphy_3123PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cbe:Cbei_4042 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (556 aa)
Cphy_3299Flavocytochrome c; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (597 aa)
Cphy_3347TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type. (561 aa)
Cphy_3558PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase. (1175 aa)
Cphy_3925PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase. (872 aa)
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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