45 items (Bordetella holmesii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOB35566.1	SlyX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)
	AOB35464.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	AOB37300.1	5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AOB35392.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AOB35176.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (776 aa)
	AOB35174.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (652 aa)
	AOB35172.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	paaD	Phenylacetic acid degradation protein PaaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	AOB34114.1	isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AOB34250.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	AOB37240.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	AOB34341.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AOB34475.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	boxC	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	boxB	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	anmK	anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (375 aa)
	AOB34798.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AOB34916.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	paaX	Phenylacetic acid degradation operon negative regulatory protein PaaX; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	paaG	1,2-phenylacetyl-CoA epoxidase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	paaH	1,2-phenylacetyl-CoA epoxidase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
	paaI	phenylacetate-CoA oxygenase subunit PaaI; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	paaJ	phenylacetate-CoA oxygenase subunit PaaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	AOB37084.1	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AOB37043.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AOB36801.1	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AOB36799.1	PrpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	ligK	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	thpD	Ectoine hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AOB36594.1	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	fahA	Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AOB36487.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (129 aa)
	AOB36486.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (147 aa)
	AOB36455.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	AOB36312.1	Putative methylaconitate Delta-isomerase PrpF; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	AOB36224.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	AOB36221.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	AOB36062.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AOB35897.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AOB35853.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	AOB35732.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AOB35694.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	AOB35693.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (272 aa)
	AOB35574.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	coaBC	Phosphopantothenate synthase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (403 aa)

Your Current Organism:

Bordetella holmesii

NCBI taxonomy Id: 35814
Other names: ATCC 51541, B. holmesii, CCUG 34073, CDC F5101, CDC nonoxidizer group 2 (NO-2), CIP 104394, DSM 13416, LMG 15945, LMG:15945, NCTC 12912

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOB34114.1	AOB35172.1	BBB42_00540	BBB42_06450	isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AOB34114.1	AOB35174.1	BBB42_00540	BBB42_06460	isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AOB34114.1	AOB36221.1	BBB42_00540	BBB42_12355	isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AOB34114.1	boxC	BBB42_00540	BBB42_02875	isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AOB34250.1	AOB35172.1	BBB42_01300	BBB42_06450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AOB34250.1	AOB35174.1	BBB42_01300	BBB42_06460	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AOB34250.1	AOB36221.1	BBB42_01300	BBB42_12355	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AOB34250.1	boxC	BBB42_01300	BBB42_02875	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AOB34341.1	AOB35172.1	BBB42_01800	BBB42_06450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
AOB34341.1	AOB35174.1	BBB42_01800	BBB42_06460	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AOB34341.1	AOB36221.1	BBB42_01800	BBB42_12355	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AOB34341.1	boxC	BBB42_01800	BBB42_02875	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AOB34475.1	AOB35172.1	BBB42_02580	BBB42_06450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AOB34475.1	AOB35174.1	BBB42_02580	BBB42_06460	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AOB34475.1	AOB35392.1	BBB42_02580	BBB42_07695	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AOB34475.1	AOB35694.1	BBB42_02580	BBB42_09415	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
AOB34475.1	AOB36221.1	BBB42_02580	BBB42_12355	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AOB34475.1	boxC	BBB42_02580	BBB42_02875	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AOB34916.1	AOB35172.1	BBB42_05025	BBB42_06450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AOB34916.1	AOB35174.1	BBB42_05025	BBB42_06460	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770

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