Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AOB34156.1 | AOB36342.1 | BBB42_00755 | BBB42_13070 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | 0.905 |
| AOB34156.1 | pnp | BBB42_00755 | BBB42_08975 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.715 |
| AOB34156.1 | rph | BBB42_00755 | BBB42_10290 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.455 |
| AOB34561.1 | surE | BBB42_03070 | BBB42_10485 | NADH pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.912 |
| AOB34732.1 | Fpr | BBB42_04020 | BBB42_10195 | ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.914 |
| AOB35574.1 | AOB37300.1 | BBB42_08755 | BBB42_08115 | Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.903 |
| AOB35574.1 | fahA | BBB42_08755 | BBB42_13870 | Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| AOB35574.1 | hmgA | BBB42_08755 | BBB42_13865 | Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | LysR family transcriptional regulator; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. | 0.545 |
| AOB35857.1 | rdgB | BBB42_10295 | BBB42_10250 | YicC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.420 |
| AOB35857.1 | rph | BBB42_10295 | BBB42_10290 | YicC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.709 |
| AOB35897.1 | AOB36801.1 | BBB42_10510 | BBB42_15660 | Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.906 |
| AOB35897.1 | LigJ | BBB42_10510 | BBB42_15645 | Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.939 |
| AOB35897.1 | ligK | BBB42_10510 | BBB42_15640 | Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.938 |
| AOB35897.1 | pcaD | BBB42_10510 | BBB42_16570 | Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.705 |
| AOB36062.1 | LigJ | BBB42_11405 | BBB42_15645 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.798 |
| AOB36062.1 | ligK | BBB42_11405 | BBB42_15640 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.783 |
| AOB36217.1 | xseB | BBB42_12335 | BBB42_05410 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.822 |
| AOB36342.1 | AOB34156.1 | BBB42_13070 | BBB42_00755 | ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | 0.905 |
| AOB36342.1 | pnp | BBB42_13070 | BBB42_08975 | ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.715 |
| AOB36342.1 | rph | BBB42_13070 | BBB42_10290 | ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.455 |
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