STRINGSTRING
AOB34213.1 AOB34213.1 AOB37366.1 AOB37366.1 AOB37365.1 AOB37365.1 AOB36596.1 AOB36596.1 AOB36562.1 AOB36562.1 rocF rocF gcvT gcvT AOB36454.1 AOB36454.1 AOB36452.1 AOB36452.1 AOB37359.1 AOB37359.1 hemH hemH AOB36261.1 AOB36261.1 AOB36234.1 AOB36234.1 AOB36225.1 AOB36225.1 AOB36207.1 AOB36207.1 AOB36149.1 AOB36149.1 iscS iscS queD queD AOB35938.1 AOB35938.1 AOB35731.1 AOB35731.1 AOB35680.1 AOB35680.1 hutG_1 hutG_1 AOB35665.1 AOB35665.1 AOB35574.1 AOB35574.1 AOB35517.1 AOB35517.1 AOB35490.1 AOB35490.1 AOB37300.1 AOB37300.1 bioB bioB AOB35284.1 AOB35284.1 maiA maiA AOB35149.1 AOB35149.1 etfA etfA etfB etfB AOB34833.1 AOB34833.1 AOB34797.1 AOB34797.1 argC_2 argC_2 ilvA ilvA argB argB AOB34342.1 AOB34342.1 AOB34285.1 AOB34285.1 AOB34271.1 AOB34271.1 AOB34251.1 AOB34251.1 AOB34249.1 AOB34249.1 AOB37236.1 AOB37236.1 argC_1 argC_1 AOB36794.1 AOB36794.1 AOB36805.1 AOB36805.1 AOB36859.1 AOB36859.1 folK folK AOB36924.1 AOB36924.1 ubiX ubiX BBB42_17135 BBB42_17135 AOB37100.1 AOB37100.1 AOB36748.1 AOB36748.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AOB34213.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
AOB37366.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
AOB37365.1acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
AOB36596.1Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (386 aa)
AOB36562.1CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (406 aa)
rocFArginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (316 aa)
gcvTGlycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine. (366 aa)
AOB36454.1hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-IPM synthase/homocitrate synthase family. (311 aa)
AOB36452.1Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (352 aa)
AOB37359.15-carboxymethyl-2-hydroxymuconate delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (363 aa)
AOB36261.1formyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (398 aa)
AOB36234.15-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
AOB36225.1CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (406 aa)
AOB36207.1Pyridoxal-5'-phosphate-dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
AOB36149.1Serine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
iscSCysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (403 aa)
queD6-carboxytetrahydropterin synthase QueD; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
AOB35938.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
AOB35731.1acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (405 aa)
AOB35680.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
hutG_1Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. (315 aa)
AOB35665.1Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (477 aa)
AOB35574.1Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
AOB35517.1Ornithine cyclodeaminase; Catalyzes the formation of L-proline from L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
AOB35490.1Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
AOB37300.15-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
bioBBiotin synthase BioB; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (322 aa)
AOB35284.1malonyl-CoA decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
maiAMaleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
AOB35149.1Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
etfAElectron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
etfBElectron transporter RnfB; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
AOB34833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
AOB34797.1Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (548 aa)
argC_2N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (355 aa)
ilvAPorin; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (502 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (300 aa)
AOB34342.1CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (410 aa)
AOB34285.1acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
AOB34271.1Alpha-ketoglutarate-dependent dioxygenase AlkB; Oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
AOB34251.1Carnitine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (380 aa)
AOB34249.1CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (394 aa)
AOB37236.1Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
argC_1N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. (312 aa)
AOB36794.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
AOB36805.1acyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (235 aa)
AOB36859.1acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (374 aa)
folK2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
AOB36924.1CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (395 aa)
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (188 aa)
BBB42_17135DNA protecting protein DprA; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
AOB37100.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
AOB36748.1acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
Your Current Organism:
Bordetella holmesii
NCBI taxonomy Id: 35814
Other names: ATCC 51541, B. holmesii, CCUG 34073, CDC F5101, CDC nonoxidizer group 2 (NO-2), CIP 104394, DSM 13416, LMG 15945, LMG:15945, NCTC 12912
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