(23 nodes) Dimeric alpha-beta barrel network (Acidovorax sp. KKS102)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFU43774.1	DGPF domain-containing protein; COG3795 Uncharacterized protein conserved in bacteria. (138 aa)
	AFU43775.1	COG3795 Uncharacterized protein conserved in bacteria. (117 aa)
	AFU43852.1	NIPSNAP family containing protein. (114 aa)
	AFU43853.1	Antibiotic biosynthesis monooxygenase; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides. (87 aa)
	AFU43970.1	COG1522 Transcriptional regulators. (149 aa)
	AFU44062.1	Hypothetical protein. (66 aa)
	AFU44251.1	COG1522 Transcriptional regulators. (153 aa)
	AFU44321.1	COG1522 Transcriptional regulators. (160 aa)
	AFU45295.1	Hypothetical protein. (68 aa)
	AFU46124.1	COG1522 Transcriptional regulators. (150 aa)
	AFU46183.1	Ethyl tert-butyl ether degradation EthD. (108 aa)
	AFU46561.1	COG1522 Transcriptional regulators. (157 aa)
	AFU46949.1	Hypothetical protein. (100 aa)
	AFU46998.1	COG1522 Transcriptional regulators. (157 aa)
	AFU47000.1	COG1522 Transcriptional regulators. (155 aa)
	AFU47392.1	Antibiotic biosynthesis monooxygenase; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides. (100 aa)
	AFU47587.1	COG1522 Transcriptional regulators. (163 aa)
	AFU47741.1	COG1522 Transcriptional regulators. (162 aa)
	AFU47779.1	COG1522 Transcriptional regulators. (143 aa)
	AFU47913.1	NIPSNAP family containing protein. (102 aa)
	AFU48027.1	COG1522 Transcriptional regulators. (171 aa)
	AFU48269.1	Hypothetical protein. (242 aa)
	AFU48303.1	COG1522 Transcriptional regulators. (160 aa)

Your Current Organism:

Acidovorax sp. KKS102

NCBI taxonomy Id: 358220
Other names: A. sp. KKS102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFU43774.1	AFU43775.1	C380_00220	C380_00225	DGPF domain-containing protein; COG3795 Uncharacterized protein conserved in bacteria.	COG3795 Uncharacterized protein conserved in bacteria.	0.908
AFU43775.1	AFU43774.1	C380_00225	C380_00220	COG3795 Uncharacterized protein conserved in bacteria.	DGPF domain-containing protein; COG3795 Uncharacterized protein conserved in bacteria.	0.908
AFU43852.1	AFU43853.1	C380_00620	C380_00625	NIPSNAP family containing protein.	Antibiotic biosynthesis monooxygenase; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides.	0.902
AFU43853.1	AFU43852.1	C380_00625	C380_00620	Antibiotic biosynthesis monooxygenase; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides.	NIPSNAP family containing protein.	0.902
AFU43853.1	AFU47913.1	C380_00625	C380_21105	Antibiotic biosynthesis monooxygenase; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides.	NIPSNAP family containing protein.	0.725
AFU44251.1	AFU46124.1	C380_02625	C380_12115	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.773
AFU44251.1	AFU47587.1	C380_02625	C380_19465	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.772
AFU44251.1	AFU47741.1	C380_02625	C380_20235	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.728
AFU44251.1	AFU48027.1	C380_02625	C380_21675	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.772
AFU44321.1	AFU46124.1	C380_02975	C380_12115	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.766
AFU44321.1	AFU47779.1	C380_02975	C380_20425	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.715
AFU46124.1	AFU44251.1	C380_12115	C380_02625	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.773
AFU46124.1	AFU44321.1	C380_12115	C380_02975	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.766
AFU46124.1	AFU46998.1	C380_12115	C380_16515	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.758
AFU46124.1	AFU47587.1	C380_12115	C380_19465	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.755
AFU46124.1	AFU47741.1	C380_12115	C380_20235	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.586
AFU46124.1	AFU48027.1	C380_12115	C380_21675	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.765
AFU46124.1	AFU48303.1	C380_12115	C380_23055	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.767
AFU46998.1	AFU46124.1	C380_16515	C380_12115	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.758
AFU46998.1	AFU47779.1	C380_16515	C380_20425	COG1522 Transcriptional regulators.	COG1522 Transcriptional regulators.	0.662