6 items (Halobiforma lacisalsi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW96391.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	APW97240.1	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	APW97918.1	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology. (964 aa)
	APW98518.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	APW98571.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0212 family. (165 aa)
	APW99107.1	HTR-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)

Your Current Organism:

Halobiforma lacisalsi

NCBI taxonomy Id: 358396
Other names: H. lacisalsi AJ5, Halobiforma lacisalsi AJ5, Halobiforma lacisalsi str. AJ5, Halobiforma lacisalsi strain AJ5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW96391.1	APW97240.1	CHINAEXTREME_00820	CHINAEXTREME_05400	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
APW96391.1	APW97918.1	CHINAEXTREME_00820	CHINAEXTREME_09050	Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APW96391.1	APW98518.1	CHINAEXTREME_00820	CHINAEXTREME_12365	Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
APW96391.1	APW98571.1	CHINAEXTREME_00820	CHINAEXTREME_12645	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0212 family.	0.698
APW96391.1	APW99107.1	CHINAEXTREME_00820	CHINAEXTREME_15575	Derived by automated computational analysis using gene prediction method: Protein Homology.	HTR-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APW97240.1	APW96391.1	CHINAEXTREME_05400	CHINAEXTREME_00820	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
APW97240.1	APW97918.1	CHINAEXTREME_05400	CHINAEXTREME_09050	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APW97240.1	APW98518.1	CHINAEXTREME_05400	CHINAEXTREME_12365	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
APW97240.1	APW98571.1	CHINAEXTREME_05400	CHINAEXTREME_12645	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0212 family.	0.676
APW97240.1	APW99107.1	CHINAEXTREME_05400	CHINAEXTREME_15575	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	HTR-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
APW97918.1	APW96391.1	CHINAEXTREME_09050	CHINAEXTREME_00820	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APW97918.1	APW97240.1	CHINAEXTREME_09050	CHINAEXTREME_05400	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APW97918.1	APW98518.1	CHINAEXTREME_09050	CHINAEXTREME_12365	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
APW97918.1	APW98571.1	CHINAEXTREME_09050	CHINAEXTREME_12645	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0212 family.	0.675
APW97918.1	APW99107.1	CHINAEXTREME_09050	CHINAEXTREME_15575	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	HTR-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
APW98518.1	APW96391.1	CHINAEXTREME_12365	CHINAEXTREME_00820	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
APW98518.1	APW97240.1	CHINAEXTREME_12365	CHINAEXTREME_05400	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
APW98518.1	APW97918.1	CHINAEXTREME_12365	CHINAEXTREME_09050	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligosaccharyl transferase, archaeosortase A system-associated; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
APW98518.1	APW98571.1	CHINAEXTREME_12365	CHINAEXTREME_12645	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0212 family.	0.734
APW98518.1	APW99107.1	CHINAEXTREME_12365	CHINAEXTREME_15575	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HTR-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655