8 items (Halobiforma lacisalsi) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pyrF	Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily. (265 aa)
	pyrB	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	pyrE	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). (178 aa)
	APW96899.1	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	carB	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family. (1057 aa)
	carA	Carbamoyl-phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family. (358 aa)
	APW99297.1	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	APW99299.1	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)

Your Current Organism:

Halobiforma lacisalsi

NCBI taxonomy Id: 358396
Other names: H. lacisalsi AJ5, Halobiforma lacisalsi AJ5, Halobiforma lacisalsi str. AJ5, Halobiforma lacisalsi strain AJ5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW96899.1	APW99299.1	CHINAEXTREME_03545	CHINAEXTREME_16645	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
APW96899.1	carA	CHINAEXTREME_03545	CHINAEXTREME_01090	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl-phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.	0.906
APW96899.1	carB	CHINAEXTREME_03545	CHINAEXTREME_17985	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.914
APW96899.1	pyrB	CHINAEXTREME_03545	CHINAEXTREME_12120	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW96899.1	pyrE	CHINAEXTREME_03545	CHINAEXTREME_09225	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).	0.909
APW96899.1	pyrF	CHINAEXTREME_03545	CHINAEXTREME_13990	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily.	0.903
APW99297.1	APW99299.1	CHINAEXTREME_16635	CHINAEXTREME_16645	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
APW99297.1	carA	CHINAEXTREME_16635	CHINAEXTREME_01090	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl-phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.	0.991
APW99297.1	carB	CHINAEXTREME_16635	CHINAEXTREME_17985	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.992
APW99297.1	pyrB	CHINAEXTREME_16635	CHINAEXTREME_12120	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APW99297.1	pyrE	CHINAEXTREME_16635	CHINAEXTREME_09225	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).	0.916
APW99297.1	pyrF	CHINAEXTREME_16635	CHINAEXTREME_13990	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily.	0.907
APW99299.1	APW96899.1	CHINAEXTREME_16645	CHINAEXTREME_03545	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
APW99299.1	APW99297.1	CHINAEXTREME_16645	CHINAEXTREME_16635	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
APW99299.1	carA	CHINAEXTREME_16645	CHINAEXTREME_01090	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl-phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.	0.984
APW99299.1	carB	CHINAEXTREME_16645	CHINAEXTREME_17985	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.988
APW99299.1	pyrB	CHINAEXTREME_16645	CHINAEXTREME_12120	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APW99299.1	pyrE	CHINAEXTREME_16645	CHINAEXTREME_09225	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).	0.998
APW99299.1	pyrF	CHINAEXTREME_16645	CHINAEXTREME_13990	Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily.	0.983
carA	APW96899.1	CHINAEXTREME_01090	CHINAEXTREME_03545	Carbamoyl-phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906