(14 nodes) Benzoate degradation network (Halobiforma lacisalsi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW96657.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	APW96709.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	APW96729.1	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	APW96730.1	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	APW96739.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	APW96780.1	Carboxymuconolactone decarboxylase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	APW96913.1	acetyl-CoA acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	APW97064.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	APW98067.1	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	APW99110.1	3-oxoadipate enol-lactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	APW99211.1	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	APW99300.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	APW99767.1	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	APW99860.1	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)

Your Current Organism:

Halobiforma lacisalsi

NCBI taxonomy Id: 358396
Other names: H. lacisalsi AJ5, Halobiforma lacisalsi AJ5, Halobiforma lacisalsi str. AJ5, Halobiforma lacisalsi strain AJ5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW96657.1	APW96709.1	CHINAEXTREME_02210	CHINAEXTREME_02480	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APW96657.1	APW96729.1	CHINAEXTREME_02210	CHINAEXTREME_02585	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APW96657.1	APW96730.1	CHINAEXTREME_02210	CHINAEXTREME_02590	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APW96657.1	APW96739.1	CHINAEXTREME_02210	CHINAEXTREME_02635	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APW96657.1	APW96913.1	CHINAEXTREME_02210	CHINAEXTREME_03625	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APW96657.1	APW98067.1	CHINAEXTREME_02210	CHINAEXTREME_09840	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APW96657.1	APW99211.1	CHINAEXTREME_02210	CHINAEXTREME_16165	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
APW96657.1	APW99300.1	CHINAEXTREME_02210	CHINAEXTREME_16650	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
APW96657.1	APW99767.1	CHINAEXTREME_02210	CHINAEXTREME_19215	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
APW96657.1	APW99860.1	CHINAEXTREME_02210	CHINAEXTREME_19715	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APW96709.1	APW96657.1	CHINAEXTREME_02480	CHINAEXTREME_02210	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APW96709.1	APW96729.1	CHINAEXTREME_02480	CHINAEXTREME_02585	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APW96709.1	APW96730.1	CHINAEXTREME_02480	CHINAEXTREME_02590	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
APW96709.1	APW96739.1	CHINAEXTREME_02480	CHINAEXTREME_02635	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
APW96709.1	APW96913.1	CHINAEXTREME_02480	CHINAEXTREME_03625	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APW96709.1	APW98067.1	CHINAEXTREME_02480	CHINAEXTREME_09840	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APW96709.1	APW99211.1	CHINAEXTREME_02480	CHINAEXTREME_16165	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APW96709.1	APW99300.1	CHINAEXTREME_02480	CHINAEXTREME_16650	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
APW96709.1	APW99767.1	CHINAEXTREME_02480	CHINAEXTREME_19215	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
APW96709.1	APW99860.1	CHINAEXTREME_02480	CHINAEXTREME_19715	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketoacyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900