STRINGSTRING
SFS14499.1 SFS14499.1 SFS18825.1 SFS18825.1 SFS22763.1 SFS22763.1 SFS22973.1 SFS22973.1 SFS23434.1 SFS23434.1 cas3 cas3 cas5c cas5c cas8c cas8c cas7c cas7c cas4 cas4 cas1 cas1 cas2 cas2 SFS23597.1 SFS23597.1 SFS23703.1 SFS23703.1 SFS23706.1 SFS23706.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SFS14499.1Hypothetical protein. (43 aa)
SFS18825.1Transposase IS200 like. (79 aa)
SFS22763.1Transposase IS200 like. (74 aa)
SFS22973.1Hypothetical protein. (47 aa)
SFS23434.1Hypothetical protein. (113 aa)
cas3CRISPR-associated endonuclease/helicase Cas3. (718 aa)
cas5cCRISPR-associated protein Cas5d. (219 aa)
cas8cCRISPR-associated protein, Csd1 family. (582 aa)
cas7cCRISPR-associated protein Csd2. (296 aa)
cas4CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (211 aa)
cas1CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (350 aa)
cas2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (96 aa)
SFS23597.1Transposase IS200 like. (63 aa)
SFS23703.1Hypothetical protein. (43 aa)
SFS23706.1Hypothetical protein. (109 aa)
Your Current Organism:
Clostridium citroniae
NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102
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