STRINGSTRING
udp udp deoC-6 deoC-6 deoC-7 deoC-7 deoC-8 deoC-8 SFS23387.1 SFS23387.1 SFS23381.1 SFS23381.1 SFS23007.1 SFS23007.1 deoC-5 deoC-5 deoC-4 deoC-4 deoC-3 deoC-3 deoB deoB deoD-3 deoD-3 pnp pnp deoD-2 deoD-2 SFS21861.1 SFS21861.1 SFS21084.1 SFS21084.1 SFS21604.1 SFS21604.1 deoD deoD SFS20483.1 SFS20483.1 rnhA rnhA rnhB rnhB SFS15368.1 SFS15368.1 cdd cdd SFS09650.1 SFS09650.1 SFS13293.1 SFS13293.1 SFS12842.1 SFS12842.1 SFS10939.1 SFS10939.1 SFS10193.1 SFS10193.1 SFS00264.1 SFS00264.1 SFS05031.1 SFS05031.1 deoC-2 deoC-2 SFS02305.1 SFS02305.1 rdgB rdgB SFR83999.1 SFR83999.1 SFR93186.1 SFR93186.1 rny rny SFR83458.1 SFR83458.1 csrA csrA SFR84794.1 SFR84794.1 SFR84782.1 SFR84782.1 SFR84712.1 SFR84712.1 SFR96351.1 SFR96351.1 SFR96294.1 SFR96294.1 xseA xseA deoC deoC
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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udpUridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. (258 aa)
deoC-6Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (211 aa)
deoC-7Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (221 aa)
deoC-8Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (222 aa)
SFS23387.1Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (146 aa)
SFS23381.12',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase; Belongs to the 5'-nucleotidase family. (617 aa)
SFS23007.1Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (166 aa)
deoC-5Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (213 aa)
deoC-4Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (254 aa)
deoC-3Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (222 aa)
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (397 aa)
deoD-3Purine-nucleoside phosphorylase. (240 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (706 aa)
deoD-2Purine-nucleoside phosphorylase. (236 aa)
SFS21861.1Uridine phosphorylase. (280 aa)
SFS21084.1NAD+ diphosphatase. (277 aa)
SFS21604.12',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase; Belongs to the 5'-nucleotidase family. (510 aa)
deoDPurine-nucleoside phosphorylase. (233 aa)
SFS20483.1TIGR00255 family protein. (292 aa)
rnhARibonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (160 aa)
rnhBRNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (219 aa)
SFS15368.1dGTPase; Belongs to the dGTPase family. Type 2 subfamily. (336 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (141 aa)
SFS09650.1Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. (171 aa)
SFS13293.1Phosphopentomutase. (403 aa)
SFS12842.1NTP pyrophosphatase, house-cleaning of non-canonical NTPs. (119 aa)
SFS10939.1Uridine phosphorylase. (250 aa)
SFS10193.1HDIG domain-containing protein. (198 aa)
SFS00264.12',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-or 3'-nucleotidase, 5'-nucleotidase family; Belongs to the 5'-nucleotidase family. (609 aa)
SFS05031.1dGTPase. (468 aa)
deoC-2Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (221 aa)
SFS02305.1tRNA(Arg) A34 adenosine deaminase TadA. (161 aa)
rdgBXTP/dITP diphosphohydrolase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (213 aa)
SFR83999.1Adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (230 aa)
SFR93186.1Nucleoside 2-deoxyribosyltransferase. (160 aa)
rnyRibonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (516 aa)
SFR83458.1Tetrapyrrole methylase family protein / MazG family protein. (126 aa)
csrACarbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (91 aa)
SFR84794.1Uridine phosphorylase. (252 aa)
SFR84782.1Uridine phosphorylase. (265 aa)
SFR84712.1Uridine phosphorylase. (254 aa)
SFR96351.1Uncharacterized protein. (172 aa)
SFR96294.1Exodeoxyribonuclease VII small subunit. (77 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (423 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (211 aa)
Your Current Organism:
Clostridium citroniae
NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102
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