STRINGSTRING
SFS23444.1 SFS23444.1 SFS22796.1 SFS22796.1 SFS22607.1 SFS22607.1 miaA miaA SFS21689.1 SFS21689.1 SFS21032.1 SFS21032.1 kptA kptA nadD nadD SFS20466.1 SFS20466.1 SFS18320.1 SFS18320.1 SFS19420.1 SFS19420.1 SFS19417.1 SFS19417.1 SFS19193.1 SFS19193.1 SFS18966.1 SFS18966.1 SFS18885.1 SFS18885.1 SFS16938.1 SFS16938.1 SFS15717.1 SFS15717.1 SFS12995.1 SFS12995.1 SFS12308.1 SFS12308.1 SFS02071.1 SFS02071.1 SFS01647.1 SFS01647.1 SFR94327.1 SFR94327.1 SFR94227.1 SFR94227.1 murQ murQ ispE ispE SFR87936.1 SFR87936.1 mutS2 mutS2 SFR87055.1 SFR87055.1 SFR85063.1 SFR85063.1 SFR96468.1 SFR96468.1 SFR96147.1 SFR96147.1 ubiX ubiX nfo-2 nfo-2 nfo nfo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SFS23444.1DNA (cytosine-5)-methyltransferase 1. (367 aa)
SFS22796.1Hypothetical protein. (647 aa)
SFS22607.1Hypothetical protein. (187 aa)
miaAtRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (327 aa)
SFS21689.1Uncharacterized conserved protein YqgV, UPF0045/DUF77 family. (98 aa)
SFS21032.1Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. (316 aa)
kptAPutative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (179 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (215 aa)
SFS20466.1Metallo-beta-lactamase family protein. (535 aa)
SFS18320.1Beta-L-arabinofuranosidase, GH127. (629 aa)
SFS19420.1Protein of unknown function. (455 aa)
SFS19417.1Protein of unknown function. (101 aa)
SFS19193.1DNA (cytosine-5)-methyltransferase 1. (513 aa)
SFS18966.1DNA (cytosine-5)-methyltransferase 1. (303 aa)
SFS18885.1Maff2 family protein. (46 aa)
SFS16938.12''-aminoglycoside nucleotidyltransferase. (172 aa)
SFS15717.16-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase. (188 aa)
SFS12995.1Hypothetical protein. (588 aa)
SFS12308.1Hypothetical protein. (989 aa)
SFS02071.1Phosphoenolpyruvate phosphomutase. (305 aa)
SFS01647.1Hypothetical protein. (992 aa)
SFR94327.1Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family. (251 aa)
SFR94227.1MutS domain V; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (649 aa)
murQN-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (310 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (298 aa)
SFR87936.1ATP-dependent RNA helicase SUPV3L1/SUV3. (668 aa)
mutS2DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (812 aa)
SFR87055.1Hypothetical protein. (706 aa)
SFR85063.1Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family. (259 aa)
SFR96468.1Hypothetical protein. (174 aa)
SFR96147.1tRNA(His) 5'-end guanylyltransferase. (254 aa)
ubiX4-hydroxy-3-polyprenylbenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (186 aa)
nfo-2Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (277 aa)
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (327 aa)
Your Current Organism:
Clostridium citroniae
NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102
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